HL_4WQU_135

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4WQU|1|CA|U|958, 4WQU|1|CA|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_135 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0794

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WQU|1|CA|C|955
4WQU|1|CA|G|956
4WQU|1|CA|A|957
4WQU|1|CA|U|958
4WQU|1|CA|A|959
4WQU|1|CA|A|960
4WQU|1|CA|C|961
4WQU|1|CA|G|962

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CQ

50S ribosomal protein L16