HL_4WQU_138

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_138 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.2394

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

4WQU|1|CA|C|1092
4WQU|1|CA|G|1093
4WQU|1|CA|U|1094
4WQU|1|CA|A|1095
4WQU|1|CA|A|1096
4WQU|1|CA|U|1097
4WQU|1|CA|A|1098
4WQU|1|CA|G|1099

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain DZ

50S ribosomal protein L9,Elongation factor G