HL_4WQU_142

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4WQU|1|CA|G|1325, 4WQU|1|CA|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_142 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.102

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

4WQU|1|CA|G|1324
4WQU|1|CA|G|1325
4WQU|1|CA|U|1326
4WQU|1|CA|C|1327
4WQU|1|CA|G|1328
4WQU|1|CA|U|1329
4WQU|1|CA|C|1330

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CR

50S ribosomal protein L17

Chain CW

50S ribosomal protein L22