HL_4WQU_157

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4WQU|1|CA|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_157 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1723

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|CA|G|1910
4WQU|1|CA|U|1911
4WQU|1|CA|A|1912
4WQU|1|CA|A|1913
4WQU|1|CA|C|1914
4WQU|1|CA|U|1915
4WQU|1|CA|A|1916
4WQU|1|CA|U|1917
4WQU|1|CA|A|1918
4WQU|1|CA|A|1919
4WQU|1|CA|C|1920

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain DA

Small subunit ribosomal RNA; SSU rRNA

Chain DW

Transfer RNA; tRNA