HL_4WQU_159

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WQU|1|CA|A|2030, 4WQU|1|CA|A|2031, 4WQU|1|CA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_159 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.061

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|CA|G|2027
4WQU|1|CA|U|2028
4WQU|1|CA|G|2029
4WQU|1|CA|A|2030
4WQU|1|CA|A|2031
4WQU|1|CA|G|2032
4WQU|1|CA|A|2033
4WQU|1|CA|U|2034
4WQU|1|CA|G|2035
4WQU|1|CA|C|2036

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3