HL_4WQU_163

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WQU|1|CA|A|2268, 4WQU|1|CA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_163 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0589

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WQU|1|CA|C|2264
4WQU|1|CA|U|2265
4WQU|1|CA|A|2266
4WQU|1|CA|A|2267
4WQU|1|CA|A|2268
4WQU|1|CA|A|2269
4WQU|1|CA|G|2270
4WQU|1|CA|G|2271
4WQU|1|CA|U|2272
4WQU|1|CA|A|2273
4WQU|1|CA|A|2274
4WQU|1|CA|C|2275
4WQU|1|CA|G|2276

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain CQ

50S ribosomal protein L16