HL_4WQU_166

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_166 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0713

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4WQU|1|CA|C|2355
4WQU|1|CA|C|2356
4WQU|1|CA|U|2357
4WQU|1|CA|G|2358
4WQU|1|CA|C|2359
4WQU|1|CA|A|2360
4WQU|1|CA|A|2361
4WQU|1|CA|G|2362

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L27

Chain C8

50S ribosomal protein L35

Chain CP

50S ribosomal protein L15