HL_4WQU_186

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4WQU|1|DA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_186 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.0993

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4WQU|1|DA|G|259
4WQU|1|DA|G|260
4WQU|1|DA|U|261
4WQU|1|DA|A|262
4WQU|1|DA|A|263
4WQU|1|DA|U|264
4WQU|1|DA|G|265
4WQU|1|DA|G|266
4WQU|1|DA|C|267

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DQ

30S ribosomal protein S17

Chain DT

30S ribosomal protein S20