HL_4WQU_230

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGGCAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_230 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.35

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4WQU|1|DA|C|1264
4WQU|1|DA|G|1265
4WQU|1|DA|G|1266
4WQU|1|DA|C|1267
4WQU|1|DA|A|1268
4WQU|1|DA|A|1269
4WQU|1|DA|C|1270
4WQU|1|DA|G|1271

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19

Chain DU

30S ribosomal protein Thx