HL_4WQU_235

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_235 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.1815

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|CA|G|2304
4WQU|1|CA|A|2305
4WQU|1|CA|C|2306
4WQU|1|CA|G|2307
4WQU|1|CA|G|2308
4WQU|1|CA|A|2309
4WQU|1|CA|A|2310
4WQU|1|CA|A|2311
4WQU|1|CA|U|2312

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CG

50S ribosomal protein L5