HL_4WQY_169

3D structure

PDB id

4WQY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid)

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

4WQY|1|CA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQY_169 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3418

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

42

Unit IDs

4WQY|1|CA|C|2527
4WQY|1|CA|U|2528
4WQY|1|CA|G|2529
4WQY|1|CA|A|2530
4WQY|1|CA|A|2531
4WQY|1|CA|G|2532
4WQY|1|CA|A|2533
4WQY|1|CA|A|2534
4WQY|1|CA|G|2535
4WQY|1|CA|G|2536

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain C9

50S ribosomal protein L36

Chain CH

50S ribosomal protein L6

Chain DZ

50S ribosomal protein L9,Elongation factor G