4WQY Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WQY_001 | 1/AA/58:67 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WQY_002 | 1/AA/86:94 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4WQY_003 | 1/AA/121:126 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4WQY_004 | 1/AA/136:141 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WQY_005 | 1/AA/183:190 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4WQY_006 | 1/AA/214:219 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4WQY_007 | 1/AA/235:241 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WQY_008 | 1/AA/269:275 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_4WQY_009 | 1/AA/329:336 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WQY_010 | 1/AA/343:347 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4WQY_011 | 1/AA/351:359 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4WQY_012 | 1/AA/409:419 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4WQY_013 | 1/AA/437:444 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WQY_014 | 1/AA/488:493 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WQY_015 | 1/AA/513:518 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4WQY_017 | 1/AA/589:598 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4WQY_018 | 1/AA/635:641 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4WQY_019 | 1/AA/654:659 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4WQY_020 | 1/AA/666:672 | GNRA | homologous HL_4WF9_021 HL_34789.1 | |
| HL_4WQY_021 | 1/AA/759:766 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WQY_022 | 1/AA/791:800 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WQY_023 | 1/AA/826:832 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_4WQY_024 | 1/AA/873:878 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4WQY_026 | 1/AA/1000:1007 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4WQY_027 | 1/AA/1024:1031 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WQY_028 | 1/AA/1110:1120 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_4WQY_029 | 1/AA/1138:1145 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_4WQY_030 | 1/AA/1217:1223 | No text annotation | homologous HL_7RQB_031 NA | |
| HL_4WQY_031 | 1/AA/1268:1273 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WQY_032 | 1/AA/1327:1335 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WQY_033 | 1/AA/1370:1376 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4WQY_034 | 1/AA/1409:1414 | GNRA | homologous HL_5J7L_167 NA | |
| HL_4WQY_035 | 1/AA/1435:1444 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4WQY_036 | 1/AA/1499:1506 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_4WQY_037 | 1/AA/1538:1544 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4WQY_039 | 1/AA/1612:1615 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4WQY_040 | 1/AA/1658:1665 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WQY_041 | 1/AA/1677:1682 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WQY_042 | 1/AA/1738:1743 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4WQY_043 | 1/AA/1765:1771 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4WQY_044 | 1/AA/1783:1787 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WQY_045 | 1/AA/1808:1818 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4WQY_046 | 1/AA/1837:1842 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WQY_047 | 1/AA/1895:1900 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WQY_048 | 1/AA/1932:1942 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WQY_049 | 1/AA/1971:1979 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4WQY_050 | 1/AA/2049:2058 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WQY_052 | 1/AA/2226:2231 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4WQY_053 | 1/AA/2260:2268 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4WQY_054 | 1/AA/2276:2288 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WQY_224 | 1/AA/2316:2324 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_4WQY_056 | 1/AA/2336:2343 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WQY_057 | 1/AA/2367:2374 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WQY_058 | 1/AA/2386:2391 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4WQY_059 | 1/AA/2416:2425 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WQY_060 | 1/AA/2483:2491 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4WQY_061 | 1/AA/2540:2547 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4WQY_062 | 1/AA/2563:2569 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4WQY_063 | 1/AA/2606:2611 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WQY_064 | 1/AA/2670:2675 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4WQY_065 | 1/AA/2713:2718 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WQY_066 | 1/AA/2758:2772 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4WQY_068 | 1/AA/2829:2837 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WQY_069 | 1/AA/2866:2871 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WQY_215 | 1/AB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4WQY_070 | 1/AB/38:44 | No text annotation | geometric HL_7RQB_070 NA | |
| HL_4WQY_071 | 1/AB/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_4WQY_072 | 1/BA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_4WQY_075 | 1/BA/189C:189H | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4WQY_077 | 1/BA/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_4WQY_078 | 1/BA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_4WQY_079 | 1/BA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4WQY_081 | 1/BA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_4WQY_082 | 1/BA/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_4WQY_083 | 1/BA/458:473 | GNRA | homologous HL_6CZR_083 NA | |
| HL_4WQY_084 | 1/BA/522:527 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_4WQY_085 | 1/BA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_4WQY_086 | 1/BA/689:698 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_4WQY_087 | 1/BA/726:731 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_4WQY_088 | 1/BA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_4WQY_089 | 1/BA/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4WQY_090 | 1/BA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_4WQY_091 | 1/BA/897:902 | GNRA | homologous HL_5J7L_020 NA | |
| HL_4WQY_092 | 1/BA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4WQY_093 | 1/BA/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_4WQY_095 | 1/BA/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_4WQY_096 | 1/BA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_4WQY_098 | 1/BA/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.1 | |
| HL_4WQY_099 | 1/BA/1265:1270 | No text annotation | homologous HL_6CZR_099 NA | |
| HL_4WQY_100 | 1/BA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4WQY_101 | 1/BA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4WQY_102 | 1/BA/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_4WQY_103 | 1/BA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_4WQY_104 | 1/BX/13:22 | tRNA D-loop | homologous HL_6CFJ_106 HL_63054.1 | |
| HL_4WQY_105 | 1/BX/31:39 | tRNA anticodon loop | homologous HL_4TUE_034 NA | |
| HL_4WQY_106 | 1/BX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 | |
| HL_4WQY_107 | 1/CA/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WQY_108 | 1/CA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_4WQY_109 | 1/CA/123:128 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4WQY_110 | 1/CA/139:142A | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WQY_112 | 1/CA/194:201 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4WQY_113 | 1/CA/225:230 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4WQY_114 | 1/CA/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WQY_115 | 1/CA/271I:271O | No text annotation | geometric HL_5J7L_018 NA | |
| HL_4WQY_116 | 1/CA/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WQY_117 | 1/CA/319:323 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_4WQY_118 | 1/CA/327:335 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_4WQY_119 | 1/CA/382:392 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4WQY_120 | 1/CA/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WQY_121 | 1/CA/462:467 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WQY_122 | 1/CA/487:493 | GNRA | homologous HL_4WF9_016 HL_34789.1 | |
| HL_4WQY_124 | 1/CA/566:575 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4WQY_125 | 1/CA/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4WQY_126 | 1/CA/629:634 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4WQY_127 | 1/CA/641:647 | GNRA | homologous HL_4WF9_021 HL_34789.1 | |
| HL_4WQY_129 | 1/CA/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WQY_130 | 1/CA/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WQY_131 | 1/CA/779:785 | No text annotation | homologous HL_7RQB_024 NA | |
| HL_4WQY_132 | 1/CA/826:831 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4WQY_134 | 1/CA/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4WQY_135 | 1/CA/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WQY_226 | 1/CA/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.1 | |
| HL_4WQY_139 | 1/CA/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WQY_140 | 1/CA/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WQY_141 | 1/CA/1324:1330 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4WQY_142 | 1/CA/1363:1368 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4WQY_143 | 1/CA/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4WQY_144 | 1/CA/1451:1459 | No text annotation | homologous HL_7RQB_037 NA | |
| HL_4WQY_145 | 1/CA/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_4WQY_147 | 1/CA/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4WQY_148 | 1/CA/1612:1619 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WQY_149 | 1/CA/1631:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WQY_150 | 1/CA/1691:1696 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4WQY_151 | 1/CA/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_4WQY_152 | 1/CA/1752:1756 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WQY_153 | 1/CA/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_4WQY_154 | 1/CA/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WQY_155 | 1/CA/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WQY_156 | 1/CA/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WQY_157 | 1/CA/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_4WQY_158 | 1/CA/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WQY_160 | 1/CA/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_4WQY_161 | 1/CA/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_4WQY_162 | 1/CA/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WQY_227 | 1/CA/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_4WQY_164 | 1/CA/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WQY_165 | 1/CA/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WQY_166 | 1/CA/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4WQY_167 | 1/CA/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WQY_168 | 1/CA/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4WQY_218 | 1/CA/2528:2535 | GNRA variation | homologous HL_9DFE_059 HL_46665.1 | |
| HL_4WQY_170 | 1/CA/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_4WQY_171 | 1/CA/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WQY_172 | 1/CA/2658:2663 | GNRA | homologous HL_7RQB_064 NA | |
| HL_4WQY_173 | 1/CA/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WQY_174 | 1/CA/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4WQY_176 | 1/CA/2819:2827 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WQY_177 | 1/CA/2856:2861 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WQY_219 | 1/CB/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_4WQY_178 | 1/CB/38:44 | No text annotation | geometric HL_1MJI_002 HL_59381.1 | |
| HL_4WQY_179 | 1/CB/86:91 | GNRA | homologous HL_7RQB_071 NA | |
| HL_4WQY_180 | 1/DA/12:22 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_4WQY_183 | 1/DA/189C:189H | No text annotation | homologous HL_4LFB_004 HL_89167.1 | |
| HL_4WQY_185 | 1/DA/259:267 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_4WQY_186 | 1/DA/296:301 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_4WQY_187 | 1/DA/320:333 | No text annotation | homologous HL_4LFB_008 HL_39665.1 | |
| HL_4WQY_188 | 1/DA/342:347 | UNCG | homologous HL_5J7L_009 NA | |
| HL_4WQY_189 | 1/DA/379:384 | GNRA | homologous HL_4LFB_010 HL_34789.1 | |
| HL_4WQY_190 | 1/DA/419:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_4WQY_191 | 1/DA/458:473 | GNRA | homologous HL_4LFB_012 HL_34789.1 | |
| HL_4WQY_192 | 1/DA/522:527 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_4WQY_193 | 1/DA/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_4WQY_194 | 1/DA/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_4WQY_195 | 1/DA/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_4WQY_196 | 1/DA/786:796 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_4WQY_198 | 1/DA/862:867 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_4WQY_199 | 1/DA/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_4WQY_200 | 1/DA/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_4WQY_203 | 1/DA/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_4WQY_204 | 1/DA/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_4WQY_208 | 1/DA/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_4WQY_209 | 1/DA/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_4WQY_210 | 1/DA/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_4WQY_211 | 1/DA/1515:1520 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_4WQY_213 | 1/DX/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 | |
| HL_4WQY_214 | 1/DX/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WQY_016 | No text annotation | ||
| HL_4WQY_025 | No text annotation | ||
| HL_4WQY_038 | No text annotation | ||
| HL_4WQY_051 | UNCG | ||
| HL_4WQY_055 | No text annotation | ||
| HL_4WQY_067 | No text annotation | ||
| HL_4WQY_216 | No text annotation | ||
| HL_4WQY_073 | No text annotation | ||
| HL_4WQY_074 | GNRA with extra near cWW | ||
| HL_4WQY_217 | No text annotation | ||
| HL_4WQY_076 | No text annotation | ||
| HL_4WQY_225 | Mini UNCG | ||
| HL_4WQY_080 | No text annotation | ||
| HL_4WQY_094 | No text annotation | ||
| HL_4WQY_097 | No text annotation | ||
| HL_4WQY_111 | No text annotation | ||
| HL_4WQY_123 | No text annotation | ||
| HL_4WQY_128 | No text annotation | ||
| HL_4WQY_133 | No text annotation | ||
| HL_4WQY_136 | No text annotation | ||
| HL_4WQY_137 | No text annotation | ||
| HL_4WQY_138 | No text annotation | ||
| HL_4WQY_146 | No text annotation | ||
| HL_4WQY_159 | UNCG | ||
| HL_4WQY_163 | No text annotation | ||
| HL_4WQY_169 | tRNA anticodon loop | ||
| HL_4WQY_175 | No text annotation | ||
| HL_4WQY_181 | No text annotation | ||
| HL_4WQY_182 | GNRA | ||
| HL_4WQY_184 | No text annotation | ||
| HL_4WQY_220 | Mini UNCG | ||
| HL_4WQY_197 | No text annotation | ||
| HL_4WQY_221 | Mini UNCG | ||
| HL_4WQY_201 | No text annotation | ||
| HL_4WQY_222 | No text annotation | ||
| HL_4WQY_202 | No text annotation | ||
| HL_4WQY_205 | No text annotation | ||
| HL_4WQY_206 | GNRA | ||
| HL_4WQY_223 | tRNA anticodon loop | ||
| HL_4WQY_207 | GNRA | ||
| HL_4WQY_212 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WQY_001 | 1/AA/24:30, 1/AA/535:541 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WQY_002 | 1/AA/36:37, 1/AA/468:470 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4WQY_003 | 1/AA/42:43, 1/AA/461:463 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4WQY_004 | 1/AA/80:84, 1/AA/96:103 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WQY_005 | 1/AA/172:173, 1/AA/201:203 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WQY_006 | 1/AA/177:183, 1/AA/190:197 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4WQY_007 | 1/AA/228:234, 1/AA/242:247 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WQY_008 | 1/AA/291:292, 1/AA/392:394 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WQY_010 | 1/AA/304:308, 1/AA/381:384 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4WQY_011 | 1/AA/312:314, 1/AA/374:377 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WQY_012 | 1/AA/317:319, 1/AA/367:371 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WQY_013 | 1/AA/507:510, 1/AA/521:534 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WQY_014 | 1/AA/587:589, 1/AA/598:600 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4WQY_015 | 1/AA/629:633, 1/AA/643:647 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_4WQY_016 | 1/AA/719:721, 1/AA/853:855 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4WQY_017 | 1/AA/721:725, 1/AA/846:853 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_4WQY_018 | 1/AA/744:745, 1/AA/810:812 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4WQY_019 | 1/AA/749:750, 1/AA/775:777 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4WQY_020 | 1/AA/750:754, 1/AA/771:775 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4WQY_021 | 1/AA/785:788, 1/AA/803:805 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4WQY_022 | 1/AA/822:824, 1/AA/834:838 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_4WQY_023 | 1/AA/884:885, 1/AA/985:987 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4WQY_024 | 1/AA/891:893, 1/AA/976:979 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4WQY_025 | 1/AA/893:897, 1/AA/973:976 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4WQY_026 | 1/AA/905:909, 1/AA/961:965 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4WQY_027 | 1/AA/909:910, 1/AA/959:961 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_4WQY_028 | 1/AA/911:915, 1/AA/955:958 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WQY_030 | 1/AA/922:924, 1/AA/945:948 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4WQY_031 | 1/AA/924:926, 1/AA/944:945 | Minor groove platform | geometric IL_7RQB_032 NA | |
| IL_4WQY_389 | 1/AA/927:928, 1/AA/941:943 | Single bulged A | homologous IL_9DFE_032 IL_14190.1 | |
| IL_4WQY_033 | 1/AA/997:999, 1/AA/1008:1010 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WQY_034 | 1/AA/1040:1042, 1/AA/1205:1206 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4WQY_035 | 1/AA/1044:1048, 1/AA/1199:1203 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WQY_036 | 1/AA/1050:1057, 1/AA/1196:1197 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4WQY_037 | 1/AA/1057:1059, 1/AA/1195:1196 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4WQY_038 | 1/AA/1064:1070, 1/AA/1185:1190 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_4WQY_040 | 1/AA/1089:1098, 1/AA/1153:1158 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_4WQY_042 | 1/AA/1105:1108, 1/AA/1122:1125 | No text annotation | homologous IL_5J7L_285 NA | |
| IL_4WQY_043 | 1/AA/1133:1137, 1/AA/1146:1148 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_4WQY_044 | 1/AA/1241:1243, 1/AA/1293:1296 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WQY_045 | 1/AA/1247:1251, 1/AA/1286:1289 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WQY_046 | 1/AA/1253:1260, 1/AA/1280:1284 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WQY_047 | 1/AA/1264:1266, 1/AA/1275:1276 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WQY_048 | 1/AA/1308:1315, 1/AA/2033:2039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WQY_049 | 1/AA/1356:1359, 1/AA/1649:1650 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WQY_050 | 1/AA/1365:1369, 1/AA/1377:1379 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4WQY_051 | 1/AA/1397:1401, 1/AA/1422:1426 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WQY_052 | 1/AA/1403:1407, 1/AA/1416:1420 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WQY_053 | 1/AA/1461:1462, 1/AA/1629:1633 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WQY_054 | 1/AA/1463:1467, 1/AA/1624:1628 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WQY_055 | 1/AA/1479:1481, 1/AA/1604:1607 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WQY_056 | 1/AA/1483:1486, 1/AA/1598:1602 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WQY_057 | 1/AA/1495:1497, 1/AA/1509:1510 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WQY_058 | 1/AA/1498:1499, 1/AA/1506:1508 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_4WQY_059 | 1/AA/1516:1520, 1/AA/1566:1569 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4WQY_060 | 1/AA/1528:1529, 1/AA/1552:1558 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4WQY_061 | 1/AA/1535:1537, 1/AA/1545:1546 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WQY_062 | 1/AA/1572:1576, 1/AA/1587:1593 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4WQY_063 | 1/AA/1698:1703, 1/AA/2026:2028 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WQY_064 | 1/AA/1710:1712, 1/AA/2017:2019 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4WQY_065 | 1/AA/1713:1716, 1/AA/2015:2016 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_4WQY_366 | 1/AA/1713:1721, 1/AA/2012:2016 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4WQY_066 | 1/AA/1716:1721, 1/AA/2012:2015 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4WQY_067 | 1/AA/1733:1738, 1/AA/1743:1749 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4WQY_068 | 1/AA/1801:1802, 1/AA/2002:2004 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WQY_069 | 1/AA/1829:1835, 1/AA/1844:1852 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WQY_070 | 1/AA/1868:1871, 1/AA/1924:1925 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_4WQY_071 | 1/AA/1872:1873, 1/AA/1920:1923 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_4WQY_072 | 1/AA/1877:1880, 1/AA/1915:1916 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WQY_073 | 1/AA/1882:1886, 1/AA/1909:1913 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4WQY_074 | 1/AA/1887:1891, 1/AA/1904:1908 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WQY_075 | 1/AA/1955:1956, 1/AA/1986:1989 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WQY_076 | 1/AA/1956:1967, 1/AA/1983:1986 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4WQY_077 | 1/AA/2072:2074, 1/AA/2629:2630 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WQY_078 | 1/AA/2076:2079, 1/AA/2623:2627 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4WQY_079 | 1/AA/2089:2091, 1/AA/2454:2455 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4WQY_080 | 1/AA/2092:2093, 1/AA/2450:2453 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WQY_081 | 1/AA/2103:2105, 1/AA/2248:2251 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WQY_082 | 1/AA/2107:2109, 1/AA/2244:2246 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WQY_090 | 1/AA/2309:2311, 1/AA/2329:2333 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4WQY_091 | 1/AA/2362:2365, 1/AA/2376:2379 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WQY_092 | 1/AA/2413:2415, 1/AA/2426:2427 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_4WQY_093 | 1/AA/2465:2466, 1/AA/2510:2512 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4WQY_094 | 1/AA/2466:2467, 1/AA/2508:2510 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4WQY_095 | 1/AA/2469:2471, 1/AA/2505:2506 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_4WQY_096 | 1/AA/2471:2473, 1/AA/2501:2505 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4WQY_097 | 1/AA/2478:2482, 1/AA/2492:2496 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4WQY_098 | 1/AA/2519:2520, 1/AA/2592:2594 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_4WQY_099 | 1/AA/2522:2524, 1/AA/2586:2590 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_4WQY_100 | 1/AA/2524:2525, 1/AA/2583:2586 | Multiple bulged bases | geometric IL_7RQB_098 NA | |
| IL_4WQY_101 | 1/AA/2534:2535, 1/AA/2552:2555 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4WQY_102 | 1/AA/2603:2604, 1/AA/2613:2615 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4WQY_103 | 1/AA/2648:2652, 1/AA/2787:2795 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4WQY_104 | 1/AA/2664:2670, 1/AA/2675:2680 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_4WQY_105 | 1/AA/2692:2696, 1/AA/2738:2740 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WQY_106 | 1/AA/2699:2703, 1/AA/2731:2735 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WQY_107 | 1/AA/2707:2708, 1/AA/2723:2727 | Multiple bulged bases | homologous IL_7A0S_097 IL_44609.1 | |
| IL_4WQY_108 | 1/AA/2750:2755, 1/AA/2775:2780 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4WQY_109 | 1/AA/2848:2849, 1/AA/2888:2890 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WQY_110 | 1/AA/2853:2856, 1/AA/2880:2884 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WQY_111 | 1/AA/2857:2862, 1/AA/2875:2879 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WQY_112 | 1/AB/17:18, 1/AB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4WQY_113 | 1/AB/23:28, 1/AB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4WQY_114 | 1/AB/30:31, 1/AB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4WQY_115 | 1/AB/34:38, 1/AB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4WQY_116 | 1/AB/71:79, 1/AB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4WQY_117 | 1/BA/30:32, 1/BA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_4WQY_118 | 1/BA/44:45, 1/BA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_4WQY_119 | 1/BA/47:52, 1/BA/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_4WQY_120 | 1/BA/54:56, 1/BA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_4WQY_121 | 1/BA/63:66, 1/BA/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_4WQY_122 | 1/BA/67:69, 1/BA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_4WQY_124 | 1/BA/129:131, 1/BA/231:232 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_4WQY_125 | 1/BA/132:136, 1/BA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_4WQY_126 | 1/BA/148:155, 1/BA/166:174 | No text annotation | ||
| IL_4WQY_127 | 1/BA/186:188, 1/BA/189L:191 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.1 | |
| IL_4WQY_129 | 1/BA/242:247, 1/BA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4WQY_130 | 1/BA/249:252, 1/BA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_4WQY_131 | 1/BA/292:293, 1/BA/304:308 | C-loop | homologous IL_6CZR_125 NA | |
| IL_4WQY_132 | 1/BA/367:369, 1/BA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_4WQY_133 | 1/BA/371:375, 1/BA/389:390 | C-loop | geometric IL_5J7L_018 NA | |
| IL_4WQY_134 | 1/BA/375:376, 1/BA/387:389 | Single bulged G | homologous IL_4LFB_016 IL_28408.1 | |
| IL_4WQY_135 | 1/BA/409:416, 1/BA/427:433 | No text annotation | geometric IL_4LFB_017 IL_62329.1 | |
| IL_4WQY_137 | 1/BA/446:450, 1/BA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_4WQY_393 | 1/BA/450:455, 1/BA/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4WQY_139 | 1/BA/504:511, 1/BA/540:541 | SSU/LSU pseudoknot | geometric IL_4LFB_020 IL_11411.1 | |
| IL_4WQY_140 | 1/BA/515:521, 1/BA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WQY_141 | 1/BA/569:575, 1/BA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4WQY_142 | 1/BA/580:584, 1/BA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4WQY_143 | 1/BA/594:596, 1/BA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_4WQY_144 | 1/BA/597:598, 1/BA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_4WQY_145 | 1/BA/605:612, 1/BA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4WQY_146 | 1/BA/654:655, 1/BA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_4WQY_147 | 1/BA/657:658, 1/BA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_4WQY_148 | 1/BA/662:666, 1/BA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_4WQY_371 | 1/BA/673:677, 1/BA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4WQY_150 | 1/BA/683:688, 1/BA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WQY_151 | 1/BA/774:778, 1/BA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_4WQY_152 | 1/BA/779:783, 1/BA/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_4WQY_153 | 1/BA/887:894, 1/BA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4WQY_154 | 1/BA/922:923, 1/BA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4WQY_155 | 1/BA/925:927, 1/BA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_4WQY_156 | 1/BA/933:935, 1/BA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_4WQY_157 | 1/BA/953:954, 1/BA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_4WQY_158 | 1/BA/993:997, 1/BA/1044:1045 | Minor groove platform | homologous IL_4LFB_039 IL_61370.1 | |
| IL_4WQY_160 | 1/BA/1048:1050, 1/BA/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_97561.1 | |
| IL_4WQY_161 | 1/BA/1052:1056, 1/BA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4WQY_162 | 1/BA/1057:1058, 1/BA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4WQY_163 | 1/BA/1060:1061, 1/BA/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_97561.1 | |
| IL_4WQY_164 | 1/BA/1061:1063, 1/BA/1193:1195 | Isolated non-canonical cWW pair | homologous IL_4LFB_047 IL_68118.1 | |
| IL_4WQY_165 | 1/BA/1124:1127, 1/BA/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_4WQY_166 | 1/BA/1129:1132, 1/BA/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_4WQY_167 | 1/BA/1247:1253, 1/BA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4WQY_168 | 1/BA/1255:1258, 1/BA/1277:1282 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_4WQY_171 | 1/BA/1303:1308, 1/BA/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_4WQY_172 | 1/BA/1399:1401, 1/BA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4WQY_173 | 1/BA/1401:1404, 1/BA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WQY_174 | 1/BA/1405:1407, 1/BA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_4WQY_176 | 1/BA/1412:1414, 1/BA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4WQY_177 | 1/BA/1416:1419, 1/BA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4WQY_178 | 1/BA/1431:1435, 1/BA/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.6 | |
| IL_4WQY_179 | 1/BA/1435:1437, 1/BA/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.1 | |
| IL_4WQY_180 | 1/BA/1440:1443, 1/BA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_93811.1 | |
| IL_4WQY_181 | 1/CA/24:30, 1/CA/510:516 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WQY_182 | 1/CA/36:37, 1/CA/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4WQY_394 | 1/CA/42:43, 1/CA/434:436 | Minor groove platform | homologous IL_9DFE_348 IL_34520.1 | |
| IL_4WQY_184 | 1/CA/81:85, 1/CA/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WQY_185 | 1/CA/183:184, 1/CA/212:214 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WQY_186 | 1/CA/188:194, 1/CA/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4WQY_187 | 1/CA/239:245, 1/CA/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WQY_188 | 1/CA/272D:272E, 1/CA/363E:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WQY_189 | 1/CA/272J:278, 1/CA/362:363 | No text annotation | homologous IL_7RQB_010 NA | |
| IL_4WQY_190 | 1/CA/280:284, 1/CA/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4WQY_191 | 1/CA/288:290, 1/CA/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WQY_192 | 1/CA/293:295, 1/CA/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WQY_193 | 1/CA/481:484, 1/CA/496:509 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WQY_194 | 1/CA/564:566, 1/CA/575:577 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4WQY_195 | 1/CA/606:610, 1/CA/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_4WQY_196 | 1/CA/672:674, 1/CA/806:808 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4WQY_197 | 1/CA/674:678, 1/CA/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_4WQY_198 | 1/CA/697:698, 1/CA/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4WQY_199 | 1/CA/702:703, 1/CA/728:730 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4WQY_200 | 1/CA/703:707, 1/CA/724:728 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4WQY_201 | 1/CA/738:741, 1/CA/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4WQY_202 | 1/CA/775:777, 1/CA/787:791 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4WQY_203 | 1/CA/837:838, 1/CA/940:942 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4WQY_204 | 1/CA/844:846, 1/CA/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4WQY_374 | 1/CA/844:850, 1/CA/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4WQY_205 | 1/CA/846:850, 1/CA/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4WQY_206 | 1/CA/858:862, 1/CA/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4WQY_207 | 1/CA/862:863, 1/CA/913:915 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_4WQY_208 | 1/CA/864:868, 1/CA/909:912 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WQY_375 | 1/CA/875:881, 1/CA/895:902 | No text annotation | ||
| IL_4WQY_212 | 1/CA/952:954, 1/CA/963:965 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WQY_214 | 1/CA/994:996, 1/CA/1159:1160 | Single bulged C | geometric IL_7RQB_035 NA | |
| IL_4WQY_215 | 1/CA/998:1002, 1/CA/1153:1157 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WQY_216 | 1/CA/1004:1011, 1/CA/1150:1151 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4WQY_217 | 1/CA/1011:1013, 1/CA/1149:1150 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4WQY_218 | 1/CA/1018:1024, 1/CA/1140:1144 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_4WQY_219 | 1/CA/1043:1052, 1/CA/1107:1112 | No text annotation | ||
| IL_4WQY_222 | 1/CA/1196:1198, 1/CA/1247:1250 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WQY_223 | 1/CA/1202:1206, 1/CA/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WQY_224 | 1/CA/1208:1215, 1/CA/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WQY_225 | 1/CA/1219:1221, 1/CA/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WQY_226 | 1/CA/1262:1269, 1/CA/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WQY_227 | 1/CA/1310:1313, 1/CA/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WQY_228 | 1/CA/1319:1323, 1/CA/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4WQY_229 | 1/CA/1351:1355, 1/CA/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WQY_230 | 1/CA/1357:1361, 1/CA/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WQY_231 | 1/CA/1415:1416, 1/CA/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WQY_232 | 1/CA/1417:1421, 1/CA/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WQY_233 | 1/CA/1433:1435, 1/CA/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WQY_234 | 1/CA/1437:1440, 1/CA/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WQY_235 | 1/CA/1448:1450, 1/CA/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WQY_236 | 1/CA/1450A:1451, 1/CA/1459:1461 | Single bulged A | geometric IL_7RQB_059 NA | |
| IL_4WQY_237 | 1/CA/1469:1473, 1/CA/1518:1523 | UAA/GAN variation | homologous IL_7RQB_060 NA | |
| IL_4WQY_238 | 1/CA/1481:1482, 1/CA/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_4WQY_239 | 1/CA/1489:1491, 1/CA/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WQY_240 | 1/CA/1526:1529, 1/CA/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_4WQY_241 | 1/CA/1651:1656, 1/CA/2004:2006 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WQY_242 | 1/CA/1663:1665, 1/CA/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_4WQY_243 | 1/CA/1666:1669, 1/CA/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4WQY_376 | 1/CA/1666:1674, 1/CA/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_80252.1 | |
| IL_4WQY_244 | 1/CA/1669:1674, 1/CA/1990:1993 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4WQY_245 | 1/CA/1686:1691, 1/CA/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4WQY_246 | 1/CA/1770:1771, 1/CA/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WQY_247 | 1/CA/1798:1804, 1/CA/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WQY_248 | 1/CA/1837:1840, 1/CA/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WQY_249 | 1/CA/1841:1842, 1/CA/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_4WQY_250 | 1/CA/1846:1849, 1/CA/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WQY_251 | 1/CA/1851:1855, 1/CA/1887:1891 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_4WQY_252 | 1/CA/1856:1860, 1/CA/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WQY_253 | 1/CA/1933:1934, 1/CA/1964:1967 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WQY_254 | 1/CA/1934:1945, 1/CA/1961:1964 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_4WQY_255 | 1/CA/2050:2052, 1/CA/2617:2618 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WQY_256 | 1/CA/2054:2057, 1/CA/2611:2615 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4WQY_257 | 1/CA/2067:2069, 1/CA/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4WQY_258 | 1/CA/2070:2071, 1/CA/2438:2441 | Minor groove platform | homologous IL_5J7L_324 NA | |
| IL_4WQY_259 | 1/CA/2081:2083, 1/CA/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WQY_260 | 1/CA/2085:2087, 1/CA/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WQY_270 | 1/CA/2297:2299, 1/CA/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_4WQY_271 | 1/CA/2350:2353, 1/CA/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WQY_272 | 1/CA/2401:2403, 1/CA/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_4WQY_273 | 1/CA/2453:2454, 1/CA/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_4WQY_274 | 1/CA/2454:2455, 1/CA/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_4WQY_275 | 1/CA/2457:2459, 1/CA/2493:2494 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_4WQY_276 | 1/CA/2459:2461, 1/CA/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4WQY_277 | 1/CA/2466:2470, 1/CA/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4WQY_278 | 1/CA/2507:2508, 1/CA/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_46637.1 | |
| IL_4WQY_279 | 1/CA/2510:2512, 1/CA/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4WQY_280 | 1/CA/2512:2513, 1/CA/2571:2574 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4WQY_281 | 1/CA/2522:2523, 1/CA/2540:2543 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4WQY_283 | 1/CA/2591:2592, 1/CA/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4WQY_284 | 1/CA/2636:2640, 1/CA/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4WQY_285 | 1/CA/2652:2658, 1/CA/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_4WQY_286 | 1/CA/2680:2684, 1/CA/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WQY_287 | 1/CA/2687:2691, 1/CA/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WQY_288 | 1/CA/2695:2696, 1/CA/2711:2714 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
| IL_4WQY_289 | 1/CA/2737:2742, 1/CA/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_4WQY_290 | 1/CA/2838:2839, 1/CA/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WQY_291 | 1/CA/2843:2846, 1/CA/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WQY_292 | 1/CA/2847:2852, 1/CA/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WQY_293 | 1/CB/17:18, 1/CB/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4WQY_294 | 1/CB/23:28, 1/CB/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4WQY_396 | 1/CB/30:31, 1/CB/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_73108.1 | |
| IL_4WQY_296 | 1/CB/34:38, 1/CB/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_4WQY_297 | 1/CB/71:79, 1/CB/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4WQY_298 | 1/DA/30:32, 1/DA/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_4WQY_299 | 1/DA/44:45, 1/DA/396:398 | Single bulged A | homologous IL_4LFB_002 IL_14190.1 | |
| IL_4WQY_300 | 1/DA/47:52, 1/DA/359:361 | No text annotation | homologous IL_4LFB_003 IL_68149.1 | |
| IL_4WQY_301 | 1/DA/54:56, 1/DA/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_4WQY_302 | 1/DA/63:66, 1/DA/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_4WQY_303 | 1/DA/67:69, 1/DA/100:102 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_01003.1 | |
| IL_4WQY_305 | 1/DA/129:131, 1/DA/231:232 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_4WQY_306 | 1/DA/132:136, 1/DA/227:230 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_4WQY_307 | 1/DA/148:153, 1/DA/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_00680.1 | |
| IL_4WQY_308 | 1/DA/186:188, 1/DA/189L:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_01003.1 | |
| IL_4WQY_309 | 1/DA/242:247, 1/DA/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_4WQY_310 | 1/DA/249:252, 1/DA/274:275 | No text annotation | homologous IL_5J7L_015 NA | |
| IL_4WQY_311 | 1/DA/292:293, 1/DA/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_4WQY_312 | 1/DA/367:369, 1/DA/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_4WQY_397 | 1/DA/371:375, 1/DA/389:390 | C-loop | homologous IL_6CZR_127 NA | |
| IL_4WQY_314 | 1/DA/375:376, 1/DA/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_4WQY_315 | 1/DA/409:416, 1/DA/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_4WQY_316 | 1/DA/446:450, 1/DA/483:488 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_4WQY_317 | 1/DA/450:455, 1/DA/476:483 | No text annotation | geometric IL_4LFB_019 IL_31561.1 | |
| IL_4WQY_318 | 1/DA/504:511, 1/DA/540:541 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_4WQY_319 | 1/DA/515:521, 1/DA/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WQY_320 | 1/DA/569:575, 1/DA/880:881 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_4WQY_321 | 1/DA/580:584, 1/DA/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_4WQY_322 | 1/DA/594:596, 1/DA/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.7 | |
| IL_4WQY_323 | 1/DA/597:598, 1/DA/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_4WQY_324 | 1/DA/605:612, 1/DA/628:633 | No text annotation | homologous IL_4LFB_026 IL_04211.1 | |
| IL_4WQY_325 | 1/DA/654:655, 1/DA/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_4WQY_326 | 1/DA/657:658, 1/DA/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_4WQY_327 | 1/DA/662:666, 1/DA/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_15225.1 | |
| IL_4WQY_381 | 1/DA/673:677, 1/DA/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_4WQY_329 | 1/DA/683:688, 1/DA/699:707 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WQY_330 | 1/DA/774:778, 1/DA/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_4WQY_331 | 1/DA/779:783, 1/DA/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_4WQY_332 | 1/DA/887:894, 1/DA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_4WQY_398 | 1/DA/922:923, 1/DA/1393:1395 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_4WQY_334 | 1/DA/925:927, 1/DA/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_4WQY_335 | 1/DA/933:935, 1/DA/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_61370.1 | |
| IL_4WQY_336 | 1/DA/953:954, 1/DA/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_4WQY_382 | 1/DA/1052:1056, 1/DA/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_4WQY_344 | 1/DA/1057:1058, 1/DA/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_4WQY_345 | 1/DA/1060:1061, 1/DA/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_4WQY_346 | 1/DA/1061:1063, 1/DA/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_4WQY_349 | 1/DA/1124:1127, 1/DA/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_4WQY_351 | 1/DA/1158:1161, 1/DA/1175:1181 | No text annotation | homologous IL_5J7L_053 NA | |
| IL_4WQY_352 | 1/DA/1247:1253, 1/DA/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_4WQY_353 | 1/DA/1255:1258, 1/DA/1277:1282 | No text annotation | ||
| IL_4WQY_355 | 1/DA/1303:1308, 1/DA/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_4WQY_356 | 1/DA/1399:1401, 1/DA/1501:1504 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_4WQY_357 | 1/DA/1401:1404, 1/DA/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WQY_358 | 1/DA/1405:1407, 1/DA/1494:1496 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_01003.1 | |
| IL_4WQY_388 | 1/DA/1412:1414, 1/DA/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_4WQY_361 | 1/DA/1416:1419, 1/DA/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_4WQY_362 | 1/DA/1431:1435, 1/DA/1466:1469 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.6 | |
| IL_4WQY_363 | 1/DA/1435:1437, 1/DA/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 | |
| IL_4WQY_364 | 1/DA/1440:1443, 1/DA/1459:1461 | No text annotation | homologous IL_4LFB_064 IL_93811.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WQY_009 | No text annotation | ||
| IL_4WQY_029 | Isolated cWS basepair | ||
| IL_4WQY_032 | Double sheared with non-canonical cWW | ||
| IL_4WQY_365 | Isolated non-canonical cWW with bulges | ||
| IL_4WQY_039 | Not an internal loop | ||
| IL_4WQY_041 | Isolated non-canonical cWW pair | ||
| IL_4WQY_083 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_084 | Isolated cWH basepair | ||
| IL_4WQY_085 | Isolated non-canonical cWW pair | ||
| IL_4WQY_367 | No text annotation | ||
| IL_4WQY_086 | No text annotation | ||
| IL_4WQY_087 | No text annotation | ||
| IL_4WQY_368 | No text annotation | ||
| IL_4WQY_390 | No text annotation | ||
| IL_4WQY_369 | No text annotation | ||
| IL_4WQY_391 | Kink-turn | ||
| IL_4WQY_088 | No text annotation | ||
| IL_4WQY_392 | No text annotation | ||
| IL_4WQY_089 | No text annotation | ||
| IL_4WQY_123 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_128 | Isolated non-canonical cWW pair | ||
| IL_4WQY_136 | No text annotation | ||
| IL_4WQY_370 | No text annotation | ||
| IL_4WQY_138 | Isolated non-canonical cWW pair | ||
| IL_4WQY_149 | No text annotation | ||
| IL_4WQY_372 | Isolated non-canonical cWW pair | ||
| IL_4WQY_159 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_373 | No text annotation | ||
| IL_4WQY_169 | Not an internal loop | ||
| IL_4WQY_170 | Minor groove platform | ||
| IL_4WQY_175 | Not an internal loop | ||
| IL_4WQY_183 | Major groove platform with extra cWW | ||
| IL_4WQY_209 | Isolated cWS basepair | ||
| IL_4WQY_210 | No text annotation | ||
| IL_4WQY_211 | No text annotation | ||
| IL_4WQY_213 | Isolated non-canonical cWW pair | ||
| IL_4WQY_220 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_221 | No text annotation | ||
| IL_4WQY_377 | Triple sheared with non-canonical cWW | ||
| IL_4WQY_261 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_262 | Isolated cWH basepair | ||
| IL_4WQY_378 | No text annotation | ||
| IL_4WQY_263 | No text annotation | ||
| IL_4WQY_264 | No text annotation | ||
| IL_4WQY_379 | Isolated near basepair | ||
| IL_4WQY_265 | No text annotation | ||
| IL_4WQY_266 | No text annotation | ||
| IL_4WQY_395 | No text annotation | ||
| IL_4WQY_380 | No text annotation | ||
| IL_4WQY_267 | No text annotation | ||
| IL_4WQY_268 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_269 | No text annotation | ||
| IL_4WQY_282 | Isolated non-canonical cWW pair | ||
| IL_4WQY_295 | No text annotation | ||
| IL_4WQY_304 | No text annotation | ||
| IL_4WQY_313 | No text annotation | ||
| IL_4WQY_328 | No text annotation | ||
| IL_4WQY_333 | Isolated non-canonical cWW with bulges | ||
| IL_4WQY_337 | Minor groove platform | ||
| IL_4WQY_338 | Isolated cWH basepair | ||
| IL_4WQY_339 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_340 | Isolated cWH basepair | ||
| IL_4WQY_341 | Isolated non-canonical cWW pair | ||
| IL_4WQY_342 | Single bulged U | ||
| IL_4WQY_343 | Tandem non-canonical cWW pairs | ||
| IL_4WQY_383 | Isolated non-canonical cWW pair | ||
| IL_4WQY_347 | Isolated cWH basepair | ||
| IL_4WQY_348 | No text annotation | ||
| IL_4WQY_384 | No text annotation | ||
| IL_4WQY_350 | Minor groove platform | ||
| IL_4WQY_385 | No text annotation | ||
| IL_4WQY_386 | No text annotation | ||
| IL_4WQY_387 | Double sheared with non-canonical cWW | ||
| IL_4WQY_354 | Double sheared | ||
| IL_4WQY_359 | Not an internal loop | ||
| IL_4WQY_360 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WQY_035 | 1/AA/30:31, 1/AA/500:507, 1/AA/534:535 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WQY_036 | 1/AA/30:31, 1/AA/500:510, 1/AA/521:535 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_4WQY_037 | 1/AA/32:35, 1/AA/471:487, 1/AA/494:499 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_4WQY_038 | 1/AA/55:56, 1/AA/69:75, 1/AA/108:112 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4WQY_039 | 1/AA/258:262, 1/AA/282:289, 1/AA/396:397 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4WQY_040 | 1/AA/321:325, 1/AA/340:349, 1/AA/361:365 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4WQY_001 | 1/AA/730:736, 1/AA/820:822, 1/AA/838:841 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4WQY_002 | 1/AA/745:747, 1/AA/779:783, 1/AA/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WQY_003 | 1/AA/1101:1103, 1/AA/1127:1133, 1/AA/1148:1150 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_4WQY_004 | 1/AA/1344:1349, 1/AA/1671:1673, 1/AA/1686:1689 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WQY_005 | 1/AA/1352:1355, 1/AA/1651:1657, 1/AA/1666:1668 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WQY_041 | 1/AA/1390:1396, 1/AA/1427:1431, 1/AA/1448:1449 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4WQY_042 | 1/AA/1470:1475, 1/AA/1611:1612, 1/AA/1615:1621 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4WQY_006 | 1/AA/2113:2115, 1/AA/2218:2222, 1/AA/2235:2240 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WQY_043 | 1/AA/2294:2296, 1/AA/2396:2407, 1/AA/2433:2439 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4WQY_007 | 1/AA/2307:2309, 1/AA/2333:2335, 1/AA/2344:2349 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WQY_008 | 1/AA/2529:2532, 1/AA/2557:2559, 1/AA/2573:2579 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4WQY_009 | 1/AA/2802:2804, 1/AA/2816:2821, 1/AA/2899:2903 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_4WQY_044 | 1/AA/2824:2825, 1/AA/2841:2846, 1/AA/2892:2896 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WQY_045 | 1/AB/11:16, 1/AB/68:69, 1/AB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_4WQY_046 | 1/BA/46:47, 1/BA/361:369, 1/BA/392:395 | No text annotation | ||
| J3_4WQY_047 | 1/BA/46:52, 1/BA/359:369, 1/BA/392:395 | No text annotation | ||
| J3_4WQY_048 | 1/BA/586:588, 1/BA/651:654, 1/BA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4WQY_049 | 1/BA/586:588, 1/BA/651:655, 1/BA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4WQY_050 | 1/BA/672:673, 1/BA/717:725, 1/BA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4WQY_010 | 1/BA/826:829, 1/BA/857:861, 1/BA/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4WQY_011 | 1/BA/936:939, 1/BA/1344:1350, 1/BA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4WQY_012 | 1/BA/943:946, 1/BA/1235:1237, 1/BA/1337:1340 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_4WQY_013 | 1/BA/955:962, 1/BA/973:984, 1/BA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4WQY_014 | 1/BA/990:993, 1/BA/1045:1047, 1/BA/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_4WQY_051 | 1/BA/990:997, 1/BA/1044:1047, 1/BA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4WQY_016 | 1/BA/1063:1068, 1/BA/1107:1113, 1/BA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4WQY_078 | 1/BA/1073:1074, 1/BA/1083:1086, 1/BA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_4WQY_017 | 1/BA/1116:1118, 1/BA/1155:1161, 1/BA/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_4WQY_018 | 1/BA/1237:1241, 1/BA/1296:1303, 1/BA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J3_4WQY_054 | 1/CA/30:31, 1/CA/474:481, 1/CA/509:510 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WQY_055 | 1/CA/30:31, 1/CA/474:484, 1/CA/496:510 | No text annotation | homologous J3_9DFE_002 J3_17917.1 | |
| J3_4WQY_056 | 1/CA/32:35, 1/CA/445:461, 1/CA/468:473 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_4WQY_057 | 1/CA/56:57, 1/CA/70:76, 1/CA/110:114 | No text annotation | homologous J3_9DFE_004 J3_01004.1 | |
| J3_4WQY_058 | 1/CA/269:271, 1/CA/271:272, 1/CA/366:370 | No text annotation | homologous J3_9DFE_005 J3_97971.2 | |
| J3_4WQY_059 | 1/CA/297:301, 1/CA/316:325, 1/CA/337:341 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_4WQY_019 | 1/CA/683:689, 1/CA/773:775, 1/CA/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4WQY_020 | 1/CA/698:700, 1/CA/732:736, 1/CA/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WQY_060 | 1/CA/1043:1062, 1/CA/1076:1091, 1/CA/1100:1112 | No text annotation | ||
| J3_4WQY_022 | 1/CA/1298:1303, 1/CA/1625:1627, 1/CA/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WQY_023 | 1/CA/1306:1309, 1/CA/1605:1611, 1/CA/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WQY_061 | 1/CA/1344:1350, 1/CA/1381:1385, 1/CA/1402:1403 | No text annotation | homologous J3_9DFE_012 J3_94309.1 | |
| J3_4WQY_062 | 1/CA/1424:1429, 1/CA/1564:1565, 1/CA/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_4WQY_024 | 1/CA/2091:2093, 1/CA/2196:2200, 1/CA/2223:2228 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WQY_063 | 1/CA/2282:2284, 1/CA/2384:2395, 1/CA/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_04772.1 | |
| J3_4WQY_025 | 1/CA/2295:2297, 1/CA/2321:2323, 1/CA/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WQY_026 | 1/CA/2517:2520, 1/CA/2545:2547, 1/CA/2561:2567 | No text annotation | homologous J3_9DFE_017 J3_32601.6 | |
| J3_4WQY_064 | 1/CA/2814:2815, 1/CA/2831:2836, 1/CA/2882:2886 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WQY_065 | 1/CB/11:16, 1/CB/68:69, 1/CB/108:110 | No text annotation | homologous J3_9DFE_020 J3_26985.1 | |
| J3_4WQY_066 | 1/DA/46:47, 1/DA/361:367, 1/DA/393:395 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_4WQY_067 | 1/DA/46:52, 1/DA/359:367, 1/DA/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_4WQY_068 | 1/DA/586:588, 1/DA/651:654, 1/DA/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4WQY_069 | 1/DA/586:588, 1/DA/651:655, 1/DA/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.5 | |
| J3_4WQY_070 | 1/DA/672:673, 1/DA/717:725, 1/DA/732:734 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4WQY_027 | 1/DA/826:829, 1/DA/857:861, 1/DA/868:874 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_4WQY_071 | 1/DA/936:939, 1/DA/1344:1350, 1/DA/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_4WQY_028 | 1/DA/943:946, 1/DA/1235:1237, 1/DA/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_4WQY_072 | 1/DA/955:962, 1/DA/973:984, 1/DA/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_4WQY_030 | 1/DA/990:993, 1/DA/1045:1047, 1/DA/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_84394.1 | |
| J3_4WQY_079 | 1/DA/990:997, 1/DA/1044:1047, 1/DA/1210:1215 | No text annotation | homologous J3_4LFB_016 J3_28881.1 | |
| J3_4WQY_032 | 1/DA/1063:1068, 1/DA/1107:1113, 1/DA/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_4WQY_081 | 1/DA/1073:1074, 1/DA/1083:1086, 1/DA/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_4WQY_033 | 1/DA/1116:1118, 1/DA/1155:1158, 1/DA/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_4WQY_076 | 1/DA/1116:1120, 1/DA/1153:1158, 1/DA/1181:1184 | No text annotation | ||
| J3_4WQY_082 | 1/DA/1116:1120, 1/DA/1153:1161, 1/DA/1175:1184 | No text annotation | ||
| J3_4WQY_034 | 1/DA/1237:1241, 1/DA/1296:1303, 1/DA/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_4WQY_001 | 1/AA/257:258, 1/AA/397:402, 1/AA/426:433, 1/AA/448:451 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4WQY_002 | 1/AA/321:325, 1/AA/340:343, 1/AA/347:349, 1/AA/361:365 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4WQY_003 | 1/AA/1316:1322, 1/AA/1340:1341, 1/AA/1692:1695, 1/AA/2031:2032 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4WQY_004 | 1/AA/1356:1360, 1/AA/1384:1389, 1/AA/1450:1451, 1/AA/1643:1650 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4WQY_005 | 1/AA/1359:1360, 1/AA/1384:1389, 1/AA/1450:1451, 1/AA/1643:1649 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4WQY_006 | 1/AA/1490:1492, 1/AA/1513:1514, 1/AA/1571:1572, 1/AA/1593:1594 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4WQY_007 | 1/AA/1803:1807, 1/AA/1819:1823, 1/AA/1858:1861, 1/AA/1997:2001 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_4WQY_008 | 1/AA/1864:1866, 1/AA/1927:1928, 1/AA/1946:1955, 1/AA/1989:1994 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4WQY_009 | 1/AA/2297:2301, 1/AA/2355:2359, 1/AA/2382:2384, 1/AA/2393:2395 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_4WQY_010 | 1/AA/2655:2658, 1/AA/2686:2688, 1/AA/2744:2748, 1/AA/2782:2784 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4WQY_011 | 1/BA/115:122, 1/BA/239:240, 1/BA/286:289, 1/BA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4WQY_012 | 1/BA/142:144, 1/BA/178:183, 1/BA/194:198, 1/BA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4WQY_013 | 1/BA/575:577, 1/BA/764:769, 1/BA/810:821, 1/BA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4WQY_014 | 1/BX/7:10, 1/BX/25:27, 1/BX/43:49, 1/BX/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_58311.1 | |
| J4_4WQY_015 | 1/CA/268:269, 1/CA/370:375, 1/CA/399:406, 1/CA/421:424 | No text annotation | homologous J4_9DFE_001 J4_94698.1 | |
| J4_4WQY_016 | 1/CA/297:301, 1/CA/316:319, 1/CA/323:325, 1/CA/337:341 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_4WQY_017 | 1/CA/1270:1276, 1/CA/1294:1295, 1/CA/1645:1648, 1/CA/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.6 | |
| J4_4WQY_018 | 1/CA/1310:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_77353.1 | |
| J4_4WQY_019 | 1/CA/1313:1314, 1/CA/1338:1343, 1/CA/1404:1405, 1/CA/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_48150.1 | |
| J4_4WQY_020 | 1/CA/1444:1445, 1/CA/1466:1467, 1/CA/1525:1526, 1/CA/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_75575.1 | |
| J4_4WQY_021 | 1/CA/1772:1776, 1/CA/1788:1792, 1/CA/1827:1830, 1/CA/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.6 | |
| J4_4WQY_022 | 1/CA/1833:1835, 1/CA/1905:1906, 1/CA/1924:1933, 1/CA/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_4WQY_023 | 1/CA/2285:2289, 1/CA/2343:2347, 1/CA/2370:2372, 1/CA/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_4WQY_024 | 1/CA/2643:2646, 1/CA/2674:2676, 1/CA/2731:2735, 1/CA/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_4WQY_025 | 1/DA/115:122, 1/DA/239:240, 1/DA/286:289, 1/DA/311:312 | No text annotation | homologous J4_4LFB_001 J4_90044.1 | |
| J4_4WQY_026 | 1/DA/142:144, 1/DA/178:183, 1/DA/194:198, 1/DA/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4WQY_027 | 1/DA/575:577, 1/DA/764:769, 1/DA/810:821, 1/DA/879:880 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_4WQY_028 | 1/DX/7:10, 1/DX/25:27, 1/DX/43:49, 1/DX/65:66 | tRNA junction | homologous J4_4WT8_034 NA | |
| J5_4WQY_001 | 1/AA/46:53, 1/AA/114:119, 1/AA/128:129, 1/AA/148:150, 1/AA/165:167 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4WQY_002 | 1/AA/257:262, 1/AA/282:289, 1/AA/396:402, 1/AA/426:433, 1/AA/448:451 | No text annotation | ||
| J5_4WQY_003 | 1/AA/556:558, 1/AA/583:587, 1/AA/600:602, 1/AA/1307:1308, 1/AA/2039:2040 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4WQY_004 | 1/AA/607:612, 1/AA/715:718, 1/AA/856:859, 1/AA/1240:1241, 1/AA/1296:1302 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4WQY_005 | 1/AA/1721:1729, 1/AA/1753:1754, 1/AA/1782:1783, 1/AA/1787:1795, 1/AA/2010:2012 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4WQY_006 | 1/AA/2079:2086, 1/AA/2458:2465, 1/AA/2512:2519, 1/AA/2594:2600, 1/AA/2618:2623 | No text annotation | ||
| J5_4WQY_007 | 1/AA/2096:2099, 1/AA/2255:2258, 1/AA/2270:2271, 1/AA/2293:2294, 1/AA/2439:2447 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_4WQY_008 | 1/BA/36:39, 1/BA/403:406, 1/BA/436:442, 1/BA/492:500, 1/BA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WQY_009 | 1/BA/58:61, 1/BA/106:113, 1/BA/314:316, 1/BA/337:339, 1/BA/350:354 | No text annotation | homologous J5_6CZR_021 NA | |
| J5_4WQY_010 | 1/CA/47:54, 1/CA/116:121, 1/CA/130:131, 1/CA/148:150, 1/CA/176:178 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_4WQY_011 | 1/CA/268:271, 1/CA/271:272, 1/CA/366:375, 1/CA/399:406, 1/CA/421:424 | No text annotation | ||
| J5_4WQY_012 | 1/CA/531:533, 1/CA/560:564, 1/CA/577:579, 1/CA/1261:1262, 1/CA/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_4WQY_013 | 1/CA/584:589, 1/CA/668:671, 1/CA/809:812, 1/CA/1195:1196, 1/CA/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.6 | |
| J5_4WQY_014 | 1/CA/601:604, 1/CA/624:628, 1/CA/635:638, 1/CA/650:652, 1/CA/652:656 | No text annotation | ||
| J5_4WQY_015 | 1/CA/1674:1682, 1/CA/1706:1707, 1/CA/1751:1752, 1/CA/1756:1764, 1/CA/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_99177.1 | |
| J5_4WQY_020 | 1/CA/2057:2064, 1/CA/2446:2453, 1/CA/2500:2507, 1/CA/2582:2588, 1/CA/2606:2611 | No text annotation | ||
| J5_4WQY_017 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2282, 1/CA/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_4WQY_021 | 1/DA/36:39, 1/DA/403:406, 1/DA/436:442, 1/DA/492:500, 1/DA/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WQY_019 | 1/DA/58:61, 1/DA/106:113, 1/DA/314:316, 1/DA/337:339, 1/DA/350:354 | No text annotation | homologous J5_4LFB_002 J5_58574.1 | |
| J6_4WQY_001 | 1/AA/44:45, 1/AA/168:172, 1/AA/203:213, 1/AA/220:224, 1/AA/251:255, 1/AA/453:460 | No text annotation | ||
| J6_4WQY_002 | 1/AA/2096:2099, 1/AA/2255:2258, 1/AA/2270:2271, 1/AA/2293:2296, 1/AA/2396:2407, 1/AA/2433:2447 | No text annotation | ||
| J6_4WQY_003 | 1/CA/44:45, 1/CA/179:183, 1/CA/214:224, 1/CA/231:235, 1/CA/262:266, 1/CA/426:433 | No text annotation | ||
| J6_4WQY_004 | 1/CA/2074:2077, 1/CA/2243:2246, 1/CA/2258:2259, 1/CA/2281:2284, 1/CA/2384:2395, 1/CA/2421:2435 | No text annotation | ||
| J7_4WQY_001 | 1/AA/8:15, 1/AA/550:556, 1/AA/2040:2045, 1/AA/2062:2065, 1/AA/2637:2642, 1/AA/2801:2802, 1/AA/2903:2904 | No text annotation | ||
| J7_4WQY_002 | 1/AA/864:869, 1/AA/882:883, 1/AA/988:991, 1/AA/1016:1022, 1/AA/1033:1037, 1/AA/1209:1210, 1/AA/1230:1235 | No text annotation | ||
| J7_4WQY_003 | 1/CA/8:15, 1/CA/525:531, 1/CA/2018:2023, 1/CA/2040:2043, 1/CA/2625:2630, 1/CA/2788:2789, 1/CA/2894:2895 | No text annotation | ||
| J7_4WQY_004 | 1/CA/817:822, 1/CA/835:836, 1/CA/943:946, 1/CA/971:976, 1/CA/987:991, 1/CA/1163:1164, 1/CA/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4WQY_052 | No text annotation | ||
| J3_4WQY_015 | No text annotation | ||
| J3_4WQY_053 | No text annotation | ||
| J3_4WQY_021 | No text annotation | ||
| J3_4WQY_029 | No text annotation | ||
| J3_4WQY_073 | No text annotation | ||
| J3_4WQY_074 | No text annotation | ||
| J3_4WQY_080 | No text annotation | ||
| J3_4WQY_031 | No text annotation | ||
| J3_4WQY_075 | No text annotation | ||
| J3_4WQY_077 | No text annotation | ||
| J5_4WQY_016 | No text annotation | ||
| J5_4WQY_018 | No text annotation |
Coloring options: