HL_4WR6_219

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CAGCCCGG(H2U)AG

Length

11 nucleotides

Bulged bases

4WR6|1|2L|C|16||||P_1, 4WR6|1|2L|C|17||||P_1, 4WR6|1|2L|C|18||||P_1, 4WR6|1|2L|G|19||||P_1, 4WR6|1|2L|G|20||||P_1

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_219 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.1656

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4WR6|1|2L|C|13||||P_1
4WR6|1|2L|A|14||||P_1
4WR6|1|2L|G|15||||P_1
4WR6|1|2L|C|16||||P_1
4WR6|1|2L|C|17||||P_1
4WR6|1|2L|C|18||||P_1
4WR6|1|2L|G|19||||P_1
4WR6|1|2L|G|20||||P_1
4WR6|1|2L|H2U|21||||P_1
4WR6|1|2L|A|22||||P_1
4WR6|1|2L|G|23||||P_1

Current chains

Chain 2L

tRNA-fMet

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 49

50S ribosomal protein L5