HL_4WR6_223

3D structure

PDB id

4WR6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACU(QUO)UA(MIA)A(PSU)C

Length

11 nucleotides

Bulged bases

4WR6|1|3K|U|34||||P_1

QA status

Modified nucleotides: QUO, MIA, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WR6_223 not in the Motif Atlas

Homologous match to HL_2BTE_002

Geometric discrepancy: 0.3816

The information below is about HL_2BTE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4WR6|1|3K|G|31||||P_1
4WR6|1|3K|A|32||||P_1
4WR6|1|3K|C|33||||P_1
4WR6|1|3K|U|34||||P_1
4WR6|1|3K|QUO|35||||P_1
4WR6|1|3K|U|36||||P_1
4WR6|1|3K|A|37||||P_1
4WR6|1|3K|MIA|38||||P_1
4WR6|1|3K|A|39||||P_1
4WR6|1|3K|PSU|40||||P_1
4WR6|1|3K|C|41||||P_1

Current chains

Chain 3K

tRNA-Tyr

Nearby chains

Chain 13

Small subunit ribosomal RNA; SSU rRNA

Chain 2I

30S ribosomal protein S11

Chain 2K

Transfer RNA; tRNA

Chain 4K

mRNA

Chain 6E

30S ribosomal protein S7