HL_4WRA_078

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4WRA|1|14|A|1780, 4WRA|1|14|C|1781, 4WRA|1|14|C|1782, 4WRA|1|14|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_078 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0607

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4WRA|1|14|U|1777
4WRA|1|14|U|1778
4WRA|1|14|U|1779
4WRA|1|14|A|1780
4WRA|1|14|C|1781
4WRA|1|14|C|1782
4WRA|1|14|A|1783
4WRA|1|14|A|1784
4WRA|1|14|A|1785
4WRA|1|14|A|1786
4WRA|1|14|A|1787

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L2

Chain L5

50S ribosomal protein L34