HL_4WRA_099

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WRA|1|14|G|2751, 4WRA|1|14|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_099 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.1773

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4WRA|1|14|C|2745
4WRA|1|14|U|2746
4WRA|1|14|G|2747
4WRA|1|14|A|2748
4WRA|1|14|A|2749
4WRA|1|14|A|2750
4WRA|1|14|G|2751
4WRA|1|14|C|2752
4WRA|1|14|A|2753
4WRA|1|14|U|2754
4WRA|1|14|C|2755
4WRA|1|14|U|2756
4WRA|1|14|A|2757
4WRA|1|14|A|2758
4WRA|1|14|G|2759

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6