HL_4WRA_140

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUUUUUG

Length

7 nucleotides

Bulged bases

4WRA|1|1H|U|163

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_140 not in the Motif Atlas

Geometric match to HL_1L9A_001

Geometric discrepancy: 0.3993

The information below is about HL_1L9A_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WRA|1|1H|C|155
4WRA|1|1H|U|161
4WRA|1|1H|U|162
4WRA|1|1H|U|163
4WRA|1|1H|U|164
4WRA|1|1H|U|165
4WRA|1|1H|G|171

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28