HL_4WRA_188

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WRA|1|1H|A|2030, 4WRA|1|1H|A|2031, 4WRA|1|1H|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_188 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0888

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WRA|1|1H|G|2027
4WRA|1|1H|U|2028
4WRA|1|1H|G|2029
4WRA|1|1H|A|2030
4WRA|1|1H|A|2031
4WRA|1|1H|G|2032
4WRA|1|1H|A|2033
4WRA|1|1H|U|2034
4WRA|1|1H|G|2035
4WRA|1|1H|C|2036

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32