HL_4WRA_249

3D structure

PDB id

4WRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4WRA|1|1H|A|1096

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRA_249 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.4807

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WRA|1|1H|G|1091
4WRA|1|1H|C|1092
4WRA|1|1H|G|1093
4WRA|1|1H|U|1094
4WRA|1|1H|A|1095
4WRA|1|1H|A|1096
4WRA|1|1H|U|1097
4WRA|1|1H|A|1098
4WRA|1|1H|G|1099
4WRA|1|1H|C|1100

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 51

50S ribosomal protein L6