HL_4WRO_221

3D structure

PDB id

4WRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

G(OMC)UCAUAAC

Length

9 nucleotides

Bulged bases

4WRO|1|2L|U|34||||P_1

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WRO_221 not in the Motif Atlas

Homologous match to HL_5E81_212

Geometric discrepancy: 0.0999

The information below is about HL_5E81_212

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

4WRO|1|2L|G|32||||P_1
4WRO|1|2L|OMC|33||||P_1
4WRO|1|2L|U|34||||P_1
4WRO|1|2L|C|35||||P_1
4WRO|1|2L|A|36||||P_1
4WRO|1|2L|U|37||||P_1
4WRO|1|2L|A|38||||P_1
4WRO|1|2L|A|39||||P_1
4WRO|1|2L|C|40||||P_1

Current chains

Chain 2L

tRNA-fMet

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 3L

Transfer RNA; tRNA

Chain 4L

RNA (30-MER)