HL_4WSD_001
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 4WSD|1|13|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.0775
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4WSD|1|13|U|12
4WSD|1|13|U|13
4WSD|1|13|U|14
4WSD|1|13|G|15
4WSD|1|13|A|16
4WSD|1|13|U|17
4WSD|1|13|C|18
4WSD|1|13|C|19
4WSD|1|13|U|20
4WSD|1|13|G|21
4WSD|1|13|G|22
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 4E
- 30S ribosomal protein S5
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