3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
UUUGAUCCUGG
Length
11 nucleotides
Bulged bases
4WSD|1|13|U|14
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_001 not in the Motif Atlas
Homologous match to HL_4LFB_001
Geometric discrepancy: 0.0775
The information below is about HL_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89881.5
Basepair signature
cWW-tHW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4WSD|1|13|U|12
4WSD|1|13|U|13
4WSD|1|13|U|14
4WSD|1|13|G|15
4WSD|1|13|A|16
4WSD|1|13|U|17
4WSD|1|13|C|18
4WSD|1|13|C|19
4WSD|1|13|U|20
4WSD|1|13|G|21
4WSD|1|13|G|22

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 4E
30S ribosomal protein S5

Coloring options:


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