3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGUUGAG
Length
7 nucleotides
Bulged bases
4WSD|1|14|G|615
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_050 not in the Motif Atlas
Homologous match to HL_7RQB_019
Geometric discrepancy: 0.1831
The information below is about HL_7RQB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32369.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
6

Unit IDs

4WSD|1|14|C|611
4WSD|1|14|G|612
4WSD|1|14|U|613
4WSD|1|14|U|614
4WSD|1|14|G|615
4WSD|1|14|A|616
4WSD|1|14|G|617

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 39
50S ribosomal protein L4

Coloring options:


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