HL_4WSD_059

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4WSD|1|14|U|958, 4WSD|1|14|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_059 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0964

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WSD|1|14|C|955
4WSD|1|14|G|956
4WSD|1|14|A|957
4WSD|1|14|U|958
4WSD|1|14|A|959
4WSD|1|14|A|960
4WSD|1|14|C|961
4WSD|1|14|G|962

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 45

50S ribosomal protein L16