HL_4WSD_084

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WSD|1|14|A|2030, 4WSD|1|14|A|2031, 4WSD|1|14|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_084 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.061

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WSD|1|14|G|2027
4WSD|1|14|U|2028
4WSD|1|14|G|2029
4WSD|1|14|A|2030
4WSD|1|14|A|2031
4WSD|1|14|G|2032
4WSD|1|14|A|2033
4WSD|1|14|U|2034
4WSD|1|14|G|2035
4WSD|1|14|C|2036

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3