HL_4WSD_089

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGGACGGAAAUCC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_089 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.2637

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

4WSD|1|14|G|2302
4WSD|1|14|G|2303
4WSD|1|14|G|2304
4WSD|1|14|A|2305
4WSD|1|14|C|2306
4WSD|1|14|G|2307
4WSD|1|14|G|2308
4WSD|1|14|A|2309
4WSD|1|14|A|2310
4WSD|1|14|A|2311
4WSD|1|14|U|2312
4WSD|1|14|C|2313
4WSD|1|14|C|2314

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 49

50S ribosomal protein L5