HL_4WSD_100

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WSD|1|14|A|2750, 4WSD|1|14|G|2751, 4WSD|1|14|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_100 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.188

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

4WSD|1|14|C|2745
4WSD|1|14|U|2746
4WSD|1|14|G|2747
4WSD|1|14|A|2748
4WSD|1|14|A|2749
4WSD|1|14|A|2750
4WSD|1|14|G|2751
4WSD|1|14|C|2752
4WSD|1|14|A|2753
4WSD|1|14|U|2754
4WSD|1|14|C|2755
4WSD|1|14|U|2756
4WSD|1|14|A|2757
4WSD|1|14|A|2758
4WSD|1|14|G|2759

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L13

Chain 59

50S ribosomal protein L6