HL_4WSD_172

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_172 not in the Motif Atlas

Homologous match to HL_7RQB_035

Geometric discrepancy: 0.0671

The information below is about HL_7RQB_035

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_87030.2

Basepair signature

cWW-F-F

Number of instances in this motif group

33

Unit IDs

4WSD|1|1H|C|1363
4WSD|1|1H|G|1364
4WSD|1|1H|A|1365
4WSD|1|1H|A|1366
4WSD|1|1H|A|1367
4WSD|1|1H|G|1368

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain J8

50S ribosomal protein L28

Chain P8

50S ribosomal protein L34