3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
4WSD|1|1H|A|1913
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_186 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.1426
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4WSD|1|1H|G|1910
4WSD|1|1H|U|1911
4WSD|1|1H|A|1912
4WSD|1|1H|A|1913
4WSD|1|1H|C|1914
4WSD|1|1H|U|1915
4WSD|1|1H|A|1916
4WSD|1|1H|U|1917
4WSD|1|1H|A|1918
4WSD|1|1H|A|1919
4WSD|1|1H|C|1920

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 13
Small subunit ribosomal RNA; SSU rRNA
Chain 1K
Transfer RNA; tRNA
Chain 2K
Transfer RNA; tRNA
Chain 4K
mRNA

Coloring options:


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