HL_4WSD_192

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WSD|1|1H|A|2268, 4WSD|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_192 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0586

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WSD|1|1H|C|2264
4WSD|1|1H|U|2265
4WSD|1|1H|A|2266
4WSD|1|1H|A|2267
4WSD|1|1H|A|2268
4WSD|1|1H|A|2269
4WSD|1|1H|G|2270
4WSD|1|1H|G|2271
4WSD|1|1H|U|2272
4WSD|1|1H|A|2273
4WSD|1|1H|A|2274
4WSD|1|1H|C|2275
4WSD|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27