HL_4WSD_209

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GGCGAC

Length

6 nucleotides

Bulged bases

4WSD|1|1J|C|88

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_209 not in the Motif Atlas

Geometric match to HL_8G9Z_001

Geometric discrepancy: 0.1095

The information below is about HL_8G9Z_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4WSD|1|1J|G|86
4WSD|1|1J|G|87
4WSD|1|1J|C|88
4WSD|1|1J|G|89
4WSD|1|1J|A|89|||A
4WSD|1|1J|C|90

Current chains

Chain 1J

5S ribosomal RNA

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 45

50S ribosomal protein L16

Chain D5

50S ribosomal protein L25