HL_4WSD_219

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

4WSD|1|2L|C|16, 4WSD|1|2L|C|17, 4WSD|1|2L|C|18, 4WSD|1|2L|G|19, 4WSD|1|2L|G|20, 4WSD|1|2L|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_219 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.1512

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4WSD|1|2L|C|13
4WSD|1|2L|A|14
4WSD|1|2L|G|15
4WSD|1|2L|C|16
4WSD|1|2L|C|17
4WSD|1|2L|C|18
4WSD|1|2L|G|19
4WSD|1|2L|G|20
4WSD|1|2L|U|21
4WSD|1|2L|A|22
4WSD|1|2L|G|23

Current chains

Chain 2L

tRNA-fMet

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 49

50S ribosomal protein L5