3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CUCAGUCGGUAGAG
Length
14 nucleotides
Bulged bases
4WSD|1|3K|U|16, 4WSD|1|3K|C|17, 4WSD|1|3K|G|18, 4WSD|1|3K|G|19, 4WSD|1|3K|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_222 not in the Motif Atlas
Homologous match to HL_7KJT_001
Geometric discrepancy: 0.5331
The information below is about HL_7KJT_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_68572.1
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

4WSD|1|3K|C|11
4WSD|1|3K|U|12
4WSD|1|3K|C|13
4WSD|1|3K|A|14
4WSD|1|3K|G|15
4WSD|1|3K|U|16
4WSD|1|3K|C|17
4WSD|1|3K|G|18
4WSD|1|3K|G|19
4WSD|1|3K|U|20
4WSD|1|3K|A|21
4WSD|1|3K|G|22
4WSD|1|3K|A|23
4WSD|1|3K|G|24

Current chains

Chain 3K
tRNA-Phe

Nearby chains

Chain 1H
Large subunit ribosomal RNA; LSU rRNA
Chain 2I
30S ribosomal protein S11

Coloring options:


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