HL_4WSD_222
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CUCAGUCGGUAGAG
- Length
- 14 nucleotides
- Bulged bases
- 4WSD|1|3K|U|16, 4WSD|1|3K|C|17, 4WSD|1|3K|G|18, 4WSD|1|3K|G|19, 4WSD|1|3K|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_222 not in the Motif Atlas
- Homologous match to HL_7KJT_001
- Geometric discrepancy: 0.5331
- The information below is about HL_7KJT_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68572.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4WSD|1|3K|C|11
4WSD|1|3K|U|12
4WSD|1|3K|C|13
4WSD|1|3K|A|14
4WSD|1|3K|G|15
4WSD|1|3K|U|16
4WSD|1|3K|C|17
4WSD|1|3K|G|18
4WSD|1|3K|G|19
4WSD|1|3K|U|20
4WSD|1|3K|A|21
4WSD|1|3K|G|22
4WSD|1|3K|A|23
4WSD|1|3K|G|24
Current chains
- Chain 3K
- tRNA-Phe
Nearby chains
- Chain 1H
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2I
- 30S ribosomal protein S11
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