HL_4WSD_231

3D structure

PDB id

4WSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UGGGGGAUGACCCCA

Length

15 nucleotides

Bulged bases

4WSD|1|14|G|1176, 4WSD|1|14|A|1177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSD_231 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3858

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4WSD|1|14|U|1167
4WSD|1|14|G|1168
4WSD|1|14|G|1169
4WSD|1|14|G|1170
4WSD|1|14|G|1171
4WSD|1|14|G|1173
4WSD|1|14|A|1174
4WSD|1|14|U|1175
4WSD|1|14|G|1176
4WSD|1|14|A|1177
4WSD|1|14|C|1178
4WSD|1|14|C|1179
4WSD|1|14|C|1180
4WSD|1|14|C|1181
4WSD|1|14|A|1182

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 95

50S ribosomal protein L21

Chain H5

50S ribosomal protein L30