HL_4WSD_241
3D structure
- PDB id
- 4WSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- UUCCCAUUCCGAACA
- Length
- 15 nucleotides
- Bulged bases
- 4WSD|1|1J|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WSD_241 not in the Motif Atlas
- Homologous match to HL_9DFE_067
- Geometric discrepancy: 0.1417
- The information below is about HL_9DFE_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
4WSD|1|1J|U|34
4WSD|1|1J|U|35
4WSD|1|1J|C|36
4WSD|1|1J|C|37
4WSD|1|1J|C|38
4WSD|1|1J|A|39
4WSD|1|1J|U|40
4WSD|1|1J|U|41
4WSD|1|1J|C|42
4WSD|1|1J|C|43
4WSD|1|1J|G|44
4WSD|1|1J|A|45
4WSD|1|1J|A|46
4WSD|1|1J|C|47
4WSD|1|1J|A|48
Current chains
- Chain 1J
- 5S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain 49
- 50S ribosomal protein L5
- Chain 65
- 50S ribosomal protein L18
- Chain I5
- 50S ribosomal protein L31
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