3D structure

PDB id
4WSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
A(PSU)UGAA(MIA)A(PSU)
Length
9 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU, MIA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WSD_242 not in the Motif Atlas
Homologous match to HL_5J8B_118
Geometric discrepancy: 0.151
The information below is about HL_5J8B_118
Detailed Annotation
tRNA anticodon loop
Broad Annotation
Anticodon loop
Motif group
HL_06059.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
54

Unit IDs

4WSD|1|1K|A|31
4WSD|1|1K|PSU|32
4WSD|1|1K|U|33
4WSD|1|1K|G|34
4WSD|1|1K|A|35
4WSD|1|1K|A|36
4WSD|1|1K|MIA|37
4WSD|1|1K|A|38
4WSD|1|1K|PSU|39

Current chains

Chain 1K
tRNA-Phe

Nearby chains

Chain 13
Small subunit ribosomal RNA; SSU rRNA
Chain 1H
Large subunit ribosomal RNA; LSU rRNA
Chain 3I
30S ribosomal protein S12
Chain 4K
mRNA

Coloring options:


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