HL_06059.4

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7		8		9	1-9	2-8	3-6
1	HL_5E81_220	5E81	0.5583	0	tRNA anticodon loop	3L	tRNA	A	31	C	32	U	33	U	34	U	35	U	36	A	37	A	38	U	39	cWW
2	HL_5E7K_237	5E7K	0.4520	0		3L	tRNA	A	31	C	32	U	33	U	34	U	35	U	36	A	37	A	38	PSU	39	cWW	ntSH
3	HL_1VTQ_002	1VTQ	0.3744	0	tRNA anticodon loop	A	T-RNA-ASP	C	31	PSU	32	U	33	G	34	U	35	C	36	1MG	37	C	38	G	39	cWW		ntSHa
4	HL_1B23_004	1B23	0.5199	0	tRNA anticodon loop	R	tRNA	A	31	PSU	32	U	33	G	34	C	35	A	36	MIA	37	A	38	PSU	39	ncWW
5	HL_5J8B_118	5J8B	0.2936	0	tRNA anticodon loop	w	tRNA	A	31	PSU	32	U	33	G	34	A	35	A	36	MIA	37	A	38	PSU	39	cWW
6	HL_5E81_235	5E81	0.2601	0	tRNA anticodon loop	1K	tRNA	A	31	C	32	U	33	U8U	34	U	35	U	36	T6A	37	A	38	PSU	39	cWW	ncWW
7	HL_1FIR_005	1FIR	0.2913	0	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	70U	34	U	35	U	36	12A	37	A	38	PSU	39	cWW	ncWB
8	HL_4V9K_034	4V9K	0.2852	0	tRNA anticodon loop	AW	tRNA	A	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	U	39	cWW	ncWW
9	HL_6NWY_034	6NWY	0.2571	0	tRNA anticodon loop	QV	tRNA	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
10	HL_7OSM_116	7OSM	0.2206	0	tRNA anticodon loop	ASIT	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	YG	37	A	38	U	39	ncWW
11	HL_4V5A_032	4V5A	0.2497	0		AV	P-SITE RNA ASL-PHE	A	30	U	31	U	32	G	33	A	34	A	35	A	36	A	37	U	38	cWW
12	HL_6UFH_007	6UFH	0.2204	0	tRNA anticodon loop (H)	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
13	HL_6UFG_007	6UFG	0.1430	0	tRNA anticodon loop	B	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW	ncWW
14	HL_4V90_033	4V90	0.3452	0	tRNA anticodon loop	AV	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
15	HL_6NTA_033	6NTA	0.2018	0		QV	P-site ASLPro	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
16	HL_6NSH_138	6NSH	0.1615	0		XV	P-site ASLPro	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
17	HL_4WT8_216	4WT8	0.1892	0	tRNA anticodon loop	D4	tRNA	G	32	C	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
18	HL_4V50_137	4V50	0.1847	0	tRNA anticodon loop	CW	PHE TRNA (UNMODIFIED BASES)	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW	ncWW
19	HL_4V9Q_214	4V9Q	0.1842	0	tRNA anticodon loop	DV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
20	HL_5E81_212	5E81	0.1654	0	tRNA anticodon loop	2K	tRNA	G	32	OMC	33	U	34	C	35	A	36	U	37	A	38	A	39	C	40	cWW
21	HL_9DFC_104	9DFC	0.1491	0		1x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
22	HL_6CFJ_107	6CFJ	0.1396	0	tRNA anticodon loop	1x	tRNA	G	31	5MC	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
23	HL_4TUE_034	4TUE	0.1572	0	tRNA anticodon loop	QV	tRNA	G	31	C	32	U	33	C	34	A	35	U	36	A	37	A	38	C	39	cWW
24	HL_6UFM_002	6UFM	0.1634	0	tRNA anticodon loop	A	tRNA	G	32	C	33	U	34	G	35	A	36	U	37	A	38	A	39	C	40	cWW
25	HL_2AZX_005	2AZX	0.1743	0	tRNA anticodon loop	D	72-MER	A	531	C	532	U	533	C	534	C	535	A	536	G	537	A	538	U	539	cWW
26	HL_7U2I_104	7U2I	0.0000	0	tRNA anticodon loop	1w	tRNA	C	31	U	32	U	33	C	34	C	35	C	36	A	37	A	38	G	39	cWW
27	HL_7VNV_002	7VNV	0.1444	0	tRNA anticodon loop	A	tRNA	C	31	OMC	32	U	33	OMU	34	A	35	C	36	A	37	A	38	G	39	cWW		ntSHa
28	HL_7QR4_001	7QR4	0.2108	0	Anticodon loop related	B	RNA CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW
29	HL_7QR3_001	7QR3	0.1957	0	Anticodon loop related	C	chimpanzee CPEB3 ribozyme	G	19	U	20	U	21	C	22	A	23	C	24	G	25	U	26	C	27	cWW		ntSHa
30	HL_5T83_002	5T83	0.2416	0	Anticodon loop related	A	Guanidine-I riboswitch	U	56	U	57	U	58	C	59	A	60	C	61	A	62	A	63	A	64	cWW		ntSHa
31	HL_1U0B_002	1U0B	0.2184	0	tRNA anticodon loop	A	tRNA	A	31	U	32	U	33	G	34	C	35	A	36	A	37	A	38	U	39	cWW
32	HL_4YCO_002	4YCO	0.1658	0	tRNA anticodon loop	D	tRNA	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
33	HL_7K98_002	7K98	0.2544	0	tRNA anticodon loop	C	tRNA	C	32	C	33	U	34	G	35	A	36	A	37	A	38	A	39	G	40	cWW	ntSH
34	HL_3TUP_002	3TUP	0.2156	0	tRNA anticodon loop	T	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
35	HL_4LNT_144	4LNT	0.1687	0		XY	messenger RNA	G	31	U	32	U	33	C	34	G	35	G	36	1MG	37	A	38	C	39	cWW
36	HL_6CAQ_034	6CAQ	0.1425	0		W	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
37	HL_4V9I_039	4V9I	0.1691	0	tRNA anticodon loop	AY	A-SITE tRNA	U	31	C	32	U	33	C	34	G	35	A	36	A	37	A	38	A	39	cWW
38	HL_4B3M_035	4B3M	0.1844	0		Z	RNA (15-mer)	A	31	U	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	cWW
39	HL_6GSK_203	6GSK	0.1787	0	tRNA anticodon loop	1K	tRNA	C	31	U	32	U	33	G	34	G	35	U	36	AET	37	A	38	G	39	cWW
40	HL_4V87_107	4V87	0.1666	0	tRNA anticodon loop	BB	TRNA-LEU	C	32	U	33	U	34	G	35	A	36	G	37	G	38	U	39	G	40	cWW
41	HL_5IBB_210	5IBB	0.1437	0	tRNA anticodon loop	1L	tRNA	C	31	C	32	U	33	U	34	A	35	C	36	A	37	A	38	G	39	cWW	ncWW
42	HL_6GSL_209	6GSL	0.1553	0	tRNA anticodon loop	1L	tRNA	G	32	RSP	33	U	34	I	35	C	36	G	37	2MA	38	A	39	C	40	cWW
43	HL_1N33_036	1N33	0.1962	0	tRNA anticodon loop	Y	ANTICODON STEM-LOOP OF SER TRANSFER RNA	C	31	C	32	U	33	G	34	G	35	A	36	A	37	A	38	G	39	cWW
44	HL_4R4V_001	4R4V	0.2101	0	Anticodon loop related	A	VS ribozyme RNA	C	626	G	627	U	628	C	629	G	630	U	631	C	632	G	633	G	634	cWW	tSH
45	HL_3WFS_002	3WFS	0.2765	0	tRNA anticodon loop	A	tRNA	A	31	C	32	U	33	G	34	A	35	A	36	A	37	A	38	U	39	ncWW	ncWW
46	HL_4WSM_209	4WSM	0.3220	0	tRNA anticodon loop	1K	tRNA	C	32	U	33	U	34	G	35	A	36	G	37	1MG	38	PSU	39	G	40	cWW
47	HL_1N32_033	1N32	0.3418	0	tRNA anticodon loop	Y	ANTICODON STEM-LOOP OF LEU-2 TRANSFER RNA	C	31	U	32	U	33	G	34	A	35	G	36	G	37	PSU	38	G	39	cWW
48	HL_1XNQ_034	1XNQ	0.3669	0	tRNA anticodon loop	X	Anticodon tRNA	G	31	C	32	U	33	I	34	C	35	G	36	A	37	A	38	C	39	cWW
49	HL_4MGN_003	4MGN	0.3388	0	tRNA anticodon loop	B	tRNA-glycine	C	30	U	31	U	32	G	33	C	34	C	35	A	36	A	37	G	38	cWW
50	HL_1N78_002	1N78	0.3819	0	tRNA anticodon loop	C	tRNA(Glu)	C	531	C	532	U	533	C	534	U	535	C	536	A	537	A	538	G	539	cWW	ncWW
51	HL_4WZD_242	4WZD	0.4937	0	tRNA anticodon loop (H)	3L	tRNA	A	32\|\|\|\|P_1	C	33\|\|\|\|P_1	U	34\|\|\|\|P_1	QUO	35\|\|\|\|P_1	U	36\|\|\|\|P_1	A	37\|\|\|\|P_1	MIA	38\|\|\|\|P_1	A	39\|\|\|\|P_1	PSU	40\|\|\|\|P_1	cWW	ncWW
52	HL_3W3S_002	3W3S	0.4130	0	tRNA anticodon loop	B	Selenocysteine transfer RNA	A	31	C	32	U	33	U	34	C	35	A	36	A	37	A	38	U	39	cWW	ncWW
53	HL_7KGA_001	7KGA	0.4762	1		A	Flavivirus DB element	U	22	C	23	A	24	G	26	C	27	C	28	U	29	A	30	G	31	cWW	ncWW
54	HL_4P5J_002	4P5J	0.5496	0	Anticodon loop related	A	tRNA-like 3' UTR element	C	25	U	26	C	27	G	28	A	29	C	30	A	31	C	32	G	33	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
AUUGAAAAU	5
GUUCGGAC	4
GCUCAUAAC	4
GCUGAUAAC	3
GUCAUAAC	2
GUUCACGUC	2
ACUGAAAAU	2
ACUUUUAAU	1
ACUUUUAA(PSU)	1
CUGUCCG	1
A(PSU)UGCA(MIA)A(PSU)	1
A(PSU)UGAA(MIA)A(PSU)	1
ACU(U8U)UU(T6A)A(PSU)	1
ACU(70U)UU(12A)A(PSU)	1
ACUCAUAAU	1
AUUGAA(YG)AU	1
G(5MC)UCAUAAC	1
ACUCCAGAU	1
CUUCCCAAG	1
CUACAAG	1
UUUCACAAA	1
AUUGCAAAU	1
CCUGAAAAG	1
UCUCGAAAA	1
CUUGGUAG	1
CUUGAGGUG	1
CCUUACAAG	1
G(RSP)U(I)CG(2MA)AC	1
CCUGGAAAG	1
CGUCGUCGG	1
CUUGAGG	1
CUUGAGG(PSU)G	1
GCU(I)CGAAC	1
CUUGCCAAG	1
CCUCUCAAG	1
ACU(QUO)UA(MIA)A(PSU)	1
ACUUCAAAU	1
UCAAGCCUAG	1
CUCGACACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUCAUAA	5
UUGAAAA	5
UUCGG(1MG)A	4
CUGAUAA	3
CUGAAAA	3
CUUUUAA	2
(5MC)UCAUAA	2
UUCACGU	2
(PSU)UGUC(1MG)C	1
(PSU)UGCA(MIA)A	1
(PSU)UGAA(MIA)A	1
CU(U8U)UU(T6A)A	1
CU(70U)UU(12A)A	1
UUGAA(YG)A	1
(OMC)UCAUAA	1
CUCCAGA	1
UUCCCAA	1
(OMC)U(OMU)ACAA	1
UUCACAA	1
UUGCAAA	1
CUCGAAA	1
UUGGU(AET)A	1
UUGAGGU	1
CUUACAA	1
(RSP)U(I)CG(2MA)A	1
CUGGAAA	1
GUCGUCG	1
UUGAG(1MG)(PSU)	1
UUGAGG(PSU)	1
CU(I)CGAA	1
UUGCCAA	1
CUCUCAA	1
CU(QUO)UA(MIA)A	1
CUUCAAA	1
CAAGCCUA	1
UCGACAC	1

Release history

Release	3.95
Date	2025-03-26
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif HL_06059.4 Version HL_06059.4 of this group appears in releases 3.95 to 3.95 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_06059.4 Version HL_06059.4 of this group appears in releases 3.95 to 3.95

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Csv

Json