HL_4WSM_006

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

4WSM|1|13|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1217

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4WSM|1|13|G|259
4WSM|1|13|G|260
4WSM|1|13|U|261
4WSM|1|13|A|262
4WSM|1|13|A|263
4WSM|1|13|U|264
4WSM|1|13|G|265
4WSM|1|13|G|266
4WSM|1|13|C|267

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 8I

30S ribosomal protein S17

Chain BI

30S ribosomal protein S20