HL_4WSM_127

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

4WSM|1|1G|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_127 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1659

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4WSM|1|1G|G|1089
4WSM|1|1G|U|1090
4WSM|1|1G|U|1091
4WSM|1|1G|A|1092
4WSM|1|1G|A|1093
4WSM|1|1G|G|1094
4WSM|1|1G|U|1095
4WSM|1|1G|C|1096

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 62

30S ribosomal protein S7