HL_4WSM_162

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4WSM|1|1H|U|958, 4WSM|1|1H|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_162 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0732

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4WSM|1|1H|C|955
4WSM|1|1H|G|956
4WSM|1|1H|A|957
4WSM|1|1H|U|958
4WSM|1|1H|A|959
4WSM|1|1H|A|960
4WSM|1|1H|C|961
4WSM|1|1H|G|962

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 88

50S ribosomal protein L16