HL_4WSM_177

3D structure

PDB id

4WSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAGAG

Length

6 nucleotides

Bulged bases

4WSM|1|1H|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WSM_177 not in the Motif Atlas

Homologous match to HL_7RQB_041

Geometric discrepancy: 0.1222

The information below is about HL_7RQB_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01057.2

Basepair signature

cWW

Number of instances in this motif group

5

Unit IDs

4WSM|1|1H|C|1630|||A
4WSM|1|1H|A|1631
4WSM|1|1H|A|1632
4WSM|1|1H|G|1633
4WSM|1|1H|A|1634
4WSM|1|1H|G|1635

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains