HL_4WT1_036

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGCUUGCG

Length

8 nucleotides

Bulged bases

4WT1|1|14|U|161

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_036 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.312

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4WT1|1|14|C|153
4WT1|1|14|G|154
4WT1|1|14|C|155
4WT1|1|14|U|161
4WT1|1|14|U|162
4WT1|1|14|G|171
4WT1|1|14|C|172
4WT1|1|14|G|173

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain F5

50S ribosomal protein L28