HL_4WT1_062

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

4WT1|1|14|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_062 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3369

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4WT1|1|14|C|1092
4WT1|1|14|G|1093
4WT1|1|14|U|1094
4WT1|1|14|A|1095
4WT1|1|14|A|1096
4WT1|1|14|U|1097
4WT1|1|14|A|1098
4WT1|1|14|G|1099

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 59

50S ribosomal protein L6