HL_4WT1_083

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WT1|1|14|A|2030, 4WT1|1|14|A|2031, 4WT1|1|14|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_083 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0735

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WT1|1|14|G|2027
4WT1|1|14|U|2028
4WT1|1|14|G|2029
4WT1|1|14|A|2030
4WT1|1|14|A|2031
4WT1|1|14|G|2032
4WT1|1|14|A|2033
4WT1|1|14|U|2034
4WT1|1|14|G|2035
4WT1|1|14|C|2036

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L3