3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
4WT1|1|14|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WT1_086 not in the Motif Atlas
Homologous match to HL_4WF9_049
Geometric discrepancy: 0.1042
The information below is about HL_4WF9_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

4WT1|1|14|C|2248
4WT1|1|14|U|2249
4WT1|1|14|G|2250
4WT1|1|14|G|2251
4WT1|1|14|G|2252
4WT1|1|14|G|2253
4WT1|1|14|C|2254
4WT1|1|14|G|2255
4WT1|1|14|G|2256

Current chains

Chain 14
23S ribosomal RNA

Nearby chains

Chain 2L
Transfer RNA; tRNA
Chain 45
50S ribosomal protein L16
Chain E5
50S ribosomal protein L27

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1264 s