HL_4WT1_086

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4WT1|1|14|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_086 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1042

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WT1|1|14|C|2248
4WT1|1|14|U|2249
4WT1|1|14|G|2250
4WT1|1|14|G|2251
4WT1|1|14|G|2252
4WT1|1|14|G|2253
4WT1|1|14|C|2254
4WT1|1|14|G|2255
4WT1|1|14|G|2256

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27