HL_4WT1_193

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_193 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0778

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4WT1|1|1H|C|2355
4WT1|1|1H|C|2356
4WT1|1|1H|U|2357
4WT1|1|1H|G|2358
4WT1|1|1H|C|2359
4WT1|1|1H|A|2360
4WT1|1|1H|A|2361
4WT1|1|1H|G|2362

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 78

50S ribosomal protein L15

Chain I8

50S ribosomal protein L27

Chain Q8

50S ribosomal protein L35