3D structure

PDB id
4WT1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.05 Å

Loop

Sequence
GACGGAAAU
Length
9 nucleotides
Bulged bases
4WT1|1|1H|A|2309
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WT1_251 not in the Motif Atlas
Homologous match to HL_5J7L_219
Geometric discrepancy: 0.3262
The information below is about HL_5J7L_219
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50860.2
Basepair signature
cWW-F-cWH-F-F-F-F
Number of instances in this motif group
6

Unit IDs

4WT1|1|1H|G|2304
4WT1|1|1H|A|2305
4WT1|1|1H|C|2306
4WT1|1|1H|G|2307
4WT1|1|1H|G|2308
4WT1|1|1H|A|2309
4WT1|1|1H|A|2310
4WT1|1|1H|A|2311
4WT1|1|1H|U|2312

Current chains

Chain 1H
23S ribosomal RNA

Nearby chains

Chain 41
50S ribosomal protein L5

Coloring options:


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