HL_4WT1_251

3D structure

PDB id

4WT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.05 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

4WT1|1|1H|A|2309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT1_251 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.3262

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4WT1|1|1H|G|2304
4WT1|1|1H|A|2305
4WT1|1|1H|C|2306
4WT1|1|1H|G|2307
4WT1|1|1H|G|2308
4WT1|1|1H|A|2309
4WT1|1|1H|A|2310
4WT1|1|1H|A|2311
4WT1|1|1H|U|2312

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 41

50S ribosomal protein L5