HL_4WT8_008

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_008 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.0926

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39665.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WT8|1|Ab|C|316
4WT8|1|Ab|A|317
4WT8|1|Ab|C|318
4WT8|1|Ab|U|319
4WT8|1|Ab|G|320
4WT8|1|Ab|A|321
4WT8|1|Ab|G|322
4WT8|1|Ab|A|323
4WT8|1|Ab|C|324
4WT8|1|Ab|A|325
4WT8|1|Ab|C|326
4WT8|1|Ab|G|327
4WT8|1|Ab|G|328
4WT8|1|Ab|G|329

Current chains

Chain Ab

RNA (1504-MER)

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AU

30S ribosomal protein S20