4WT8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4WT8_001 | 1/Ab/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4WT8_221 | 1/Ab/77:87 | No text annotation | ||
| HL_4WT8_003 | 1/Ab/153:158 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_4WT8_004 | 1/Ab/187:192 | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_4WT8_222 | 1/Ab/208:212 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_4WT8_006 | 1/Ab/255:263 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4WT8_007 | 1/Ab/292:297 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4WT8_008 | 1/Ab/316:329 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4WT8_009 | 1/Ab/338:343 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4WT8_010 | 1/Ab/375:380 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4WT8_011 | 1/Ab/415:420 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4WT8_012 | 1/Ab/453:459 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4WT8_013 | 1/Ab/506:511 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4WT8_014 | 1/Ab/601:607 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4WT8_015 | 1/Ab/673:682 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4WT8_016 | 1/Ab/710:715 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4WT8_017 | 1/Ab/770:780 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4WT8_018 | 1/Ab/822:826 | Mini UNCG | homologous HL_4LFB_018 HL_48778.2 | |
| HL_4WT8_019 | 1/Ab/840:845 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4WT8_020 | 1/Ab/875:880 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4WT8_021 | 1/Ab/941:950 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4WT8_022 | 1/Ab/991:996 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4WT8_023 | 1/Ab/1059:1064 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_4WT8_024 | 1/Ab/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4WT8_241 | 1/Ab/1107:1132 | No text annotation | ||
| HL_4WT8_025 | 1/Ab/1111:1126 | No text annotation | ||
| HL_4WT8_026 | 1/Ab/1148:1153 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4WT8_027 | 1/Ab/1247:1252 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4WT8_028 | 1/Ab/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4WT8_029 | 1/Ab/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WT8_030 | 1/Ab/1430:1435 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4WT8_031 | 1/Ab/1493:1498 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4WT8_032 | 1/Bb/13:23 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_4WT8_033 | 1/Bb/77:87 | No text annotation | ||
| HL_4WT8_034 | 1/Bb/153:158 | GNRA | homologous HL_6CZR_074 NA | |
| HL_4WT8_035 | 1/Bb/187:192 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_4WT8_036 | 1/Bb/207:213 | No text annotation | homologous HL_6CZR_076 NA | |
| HL_4WT8_037 | 1/Bb/255:263 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_4WT8_038 | 1/Bb/292:297 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_4WT8_039 | 1/Bb/316:329 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_4WT8_040 | 1/Bb/338:343 | UNCG | homologous HL_6CZR_080 NA | |
| HL_4WT8_041 | 1/Bb/375:380 | GNRA | homologous HL_4LFB_010 HL_37824.7 | |
| HL_4WT8_042 | 1/Bb/415:420 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_4WT8_043 | 1/Bb/453:459 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_4WT8_044 | 1/Bb/506:511 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4WT8_045 | 1/Bb/601:607 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_4WT8_046 | 1/Bb/673:682 | No text annotation | homologous HL_4LFB_015 HL_75293.5 | |
| HL_4WT8_047 | 1/Bb/710:715 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_4WT8_048 | 1/Bb/770:780 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_4WT8_049 | 1/Bb/822:826 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_4WT8_050 | 1/Bb/840:845 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_4WT8_051 | 1/Bb/875:880 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_4WT8_052 | 1/Bb/941:950 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_4WT8_053 | 1/Bb/991:996 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_4WT8_054 | 1/Bb/1059:1064 | GNRA | homologous HL_4LFB_024 HL_37824.7 | |
| HL_4WT8_055 | 1/Bb/1072:1079 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_4WT8_229 | 1/Bb/1107:1132 | No text annotation | ||
| HL_4WT8_056 | 1/Bb/1111:1126 | No text annotation | ||
| HL_4WT8_057 | 1/Bb/1148:1153 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_4WT8_058 | 1/Bb/1247:1252 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_4WT8_059 | 1/Bb/1296:1305 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_4WT8_060 | 1/Bb/1338:1349 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_4WT8_061 | 1/Bb/1430:1435 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_4WT8_062 | 1/Bb/1493:1498 | GNRA | homologous HL_4LFB_032 HL_37824.7 | |
| HL_4WT8_063 | 1/C1/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WT8_064 | 1/C1/85:93 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4WT8_065 | 1/C1/120:125 | No text annotation | homologous HL_7A0S_003 HL_82710.2 | |
| HL_4WT8_066 | 1/C1/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WT8_067 | 1/C1/153:160 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_4WT8_068 | 1/C1/182:189 | No text annotation | geometric HL_7RQB_006 NA | |
| HL_4WT8_069 | 1/C1/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4WT8_070 | 1/C1/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WT8_071 | 1/C1/269:272 | No text annotation | ||
| HL_4WT8_072 | 1/C1/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WT8_073 | 1/C1/342:346 | No text annotation | homologous HL_7A0S_011 HL_75660.5 | |
| HL_4WT8_074 | 1/C1/350:358 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4WT8_075 | 1/C1/408:418 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4WT8_076 | 1/C1/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WT8_077 | 1/C1/487:492 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_4WT8_078 | 1/C1/512:517 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4WT8_080 | 1/C1/588:597 | No text annotation | geometric HL_7RQB_018 NA | |
| HL_4WT8_081 | 1/C1/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4WT8_082 | 1/C1/653:658 | GNRA | homologous HL_7RQB_020 NA | |
| HL_4WT8_083 | 1/C1/665:671 | GNRA | homologous HL_4WF9_021 HL_37824.7 | |
| HL_4WT8_084 | 1/C1/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WT8_085 | 1/C1/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WT8_086 | 1/C1/825:831 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4WT8_087 | 1/C1/872:877 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4WT8_231 | 1/C1/928:939 | No text annotation | ||
| HL_4WT8_088 | 1/C1/930:937 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_4WT8_089 | 1/C1/999:1006 | GNRA | homologous HL_7RQB_027 NA | |
| HL_4WT8_090 | 1/C1/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WT8_092 | 1/C1/1216:1222 | No text annotation | ||
| HL_4WT8_093 | 1/C1/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WT8_094 | 1/C1/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WT8_095 | 1/C1/1369:1375 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_4WT8_096 | 1/C1/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4WT8_097 | 1/C1/1434:1443 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_4WT8_098 | 1/C1/1497:1507 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4WT8_099 | 1/C1/1537:1543 | No text annotation | ||
| HL_4WT8_101 | 1/C1/1611:1614 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_4WT8_102 | 1/C1/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WT8_103 | 1/C1/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WT8_104 | 1/C1/1737:1742 | UNCG | geometric HL_1KUQ_001 HL_34617.5 | |
| HL_4WT8_242 | 1/C1/1763:1771 | No text annotation | geometric HL_8G9Z_001 HL_75660.5 | |
| HL_4WT8_106 | 1/C1/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WT8_107 | 1/C1/1807:1817 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4WT8_108 | 1/C1/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WT8_109 | 1/C1/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WT8_110 | 1/C1/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WT8_111 | 1/C1/1970:1978 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4WT8_112 | 1/C1/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WT8_114 | 1/C1/2225:2230 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_4WT8_115 | 1/C1/2259:2267 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_4WT8_116 | 1/C1/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WT8_244 | 1/C1/2315:2323 | No text annotation | ||
| HL_4WT8_118 | 1/C1/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WT8_119 | 1/C1/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WT8_120 | 1/C1/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4WT8_121 | 1/C1/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WT8_122 | 1/C1/2482:2490 | No text annotation | homologous HL_7A0S_059 HL_32735.2 | |
| HL_4WT8_123 | 1/C1/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4WT8_124 | 1/C1/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WT8_125 | 1/C1/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WT8_126 | 1/C1/2669:2674 | No text annotation | geometric HL_4V88_198 NA | |
| HL_4WT8_127 | 1/C1/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WT8_128 | 1/C1/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4WT8_130 | 1/C1/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WT8_131 | 1/C1/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WT8_135 | 1/C3/13:22 | tRNA D-loop | ||
| HL_4WT8_246 | 1/C3/30:40 | No text annotation | homologous HL_4V7M_039 HL_36684.4 | |
| HL_4WT8_137 | 1/C3/52:62 | No text annotation | homologous HL_4V7M_040 HL_67079.1 | |
| HL_4WT8_138 | 1/C4/13:23 | tRNA D-loop | homologous HL_4TUE_033 HL_93616.2 | |
| HL_4WT8_139 | 1/C4/32:40 | tRNA anticodon loop | homologous HL_4WT8_216 HL_06059.5 | |
| HL_4WT8_140 | 1/C4/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_28252.7 | |
| HL_4WT8_235 | 1/Cs/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4WT8_141 | 1/Cs/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4WT8_142 | 1/Cs/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.7 | |
| HL_4WT8_143 | 1/D1/57:66 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_4WT8_144 | 1/D1/85:93 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4WT8_145 | 1/D1/120:125 | No text annotation | homologous HL_7RQB_003 NA | |
| HL_4WT8_146 | 1/D1/135:140 | No text annotation | homologous HL_7RQB_004 NA | |
| HL_4WT8_147 | 1/D1/153:160 | No text annotation | homologous HL_7RQB_005 NA | |
| HL_4WT8_148 | 1/D1/182:189 | No text annotation | homologous HL_7RQB_006 NA | |
| HL_4WT8_149 | 1/D1/213:218 | No text annotation | homologous HL_7RQB_007 NA | |
| HL_4WT8_150 | 1/D1/234:240 | No text annotation | homologous HL_7RQB_008 NA | |
| HL_4WT8_236 | 1/D1/268:274 | No text annotation | homologous HL_9DFE_008 NA | |
| HL_4WT8_151 | 1/D1/269:272 | Externally structured | geometric HL_5TBW_022 NA | |
| HL_4WT8_152 | 1/D1/328:335 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_4WT8_153 | 1/D1/342:346 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_4WT8_154 | 1/D1/350:358 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_4WT8_155 | 1/D1/408:418 | No text annotation | homologous HL_7RQB_013 NA | |
| HL_4WT8_156 | 1/D1/436:443 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_4WT8_157 | 1/D1/487:492 | GNRA | homologous HL_7RQB_015 NA | |
| HL_4WT8_158 | 1/D1/512:517 | GNRA | homologous HL_7RQB_016 NA | |
| HL_4WT8_160 | 1/D1/588:597 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_4WT8_161 | 1/D1/634:640 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_4WT8_162 | 1/D1/653:658 | GNRA | homologous HL_4WF9_020 HL_37824.7 | |
| HL_4WT8_163 | 1/D1/665:671 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_4WT8_164 | 1/D1/758:765 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_4WT8_165 | 1/D1/790:799 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_4WT8_166 | 1/D1/825:831 | No text annotation | homologous HL_7A0S_023 HL_53890.2 | |
| HL_4WT8_167 | 1/D1/872:877 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_4WT8_237 | 1/D1/928:939 | No text annotation | ||
| HL_4WT8_168 | 1/D1/930:937 | No text annotation | ||
| HL_4WT8_169 | 1/D1/999:1006 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
| HL_4WT8_170 | 1/D1/1023:1030 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_4WT8_238 | 1/D1/1216:1222 | No text annotation | ||
| HL_4WT8_173 | 1/D1/1267:1272 | GNRA | homologous HL_7RQB_032 NA | |
| HL_4WT8_174 | 1/D1/1326:1334 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_4WT8_175 | 1/D1/1369:1375 | Pseudoknot geometry with 3' bulge | geometric HL_4WF9_033 HL_57176.2 | |
| HL_4WT8_176 | 1/D1/1408:1413 | GNRA | homologous HL_7RQB_035 NA | |
| HL_4WT8_177 | 1/D1/1434:1443 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_4WT8_178 | 1/D1/1497:1507 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
| HL_4WT8_179 | 1/D1/1537:1543 | No text annotation | ||
| HL_4WT8_181 | 1/D1/1611:1614 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_4WT8_182 | 1/D1/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_4WT8_183 | 1/D1/1676:1681 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_4WT8_184 | 1/D1/1737:1742 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_4WT8_185 | 1/D1/1763:1771 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_4WT8_186 | 1/D1/1782:1786 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_4WT8_187 | 1/D1/1807:1817 | No text annotation | homologous HL_4WF9_043 HL_01962.2 | |
| HL_4WT8_188 | 1/D1/1836:1841 | GNRA | homologous HL_7RQB_046 NA | |
| HL_4WT8_189 | 1/D1/1894:1899 | GNRA | homologous HL_7RQB_047 NA | |
| HL_4WT8_190 | 1/D1/1931:1941 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_4WT8_191 | 1/D1/1970:1978 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_4WT8_192 | 1/D1/2048:2057 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_4WT8_194 | 1/D1/2225:2230 | No text annotation | geometric HL_6U8D_003 HL_32346.3 | |
| HL_4WT8_195 | 1/D1/2259:2267 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_4WT8_196 | 1/D1/2275:2287 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_4WT8_247 | 1/D1/2315:2323 | No text annotation | ||
| HL_4WT8_198 | 1/D1/2335:2342 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_4WT8_199 | 1/D1/2366:2373 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_4WT8_200 | 1/D1/2385:2390 | GNRA | homologous HL_7RQB_058 NA | |
| HL_4WT8_201 | 1/D1/2415:2424 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_4WT8_202 | 1/D1/2482:2490 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_4WT8_203 | 1/D1/2539:2546 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_4WT8_204 | 1/D1/2562:2568 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_4WT8_205 | 1/D1/2605:2610 | GNRA | homologous HL_7RQB_063 NA | |
| HL_4WT8_206 | 1/D1/2669:2674 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_4WT8_207 | 1/D1/2712:2717 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_4WT8_208 | 1/D1/2757:2771 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_4WT8_210 | 1/D1/2828:2836 | No text annotation | homologous HL_7RQB_068 NA | |
| HL_4WT8_211 | 1/D1/2865:2870 | GNRA | homologous HL_7RQB_069 NA | |
| HL_4WT8_212 | 1/D3/13:22 | No text annotation | homologous HL_6GSL_208 NA | |
| HL_4WT8_213 | 1/D3/30:40 | No text annotation | homologous HL_4V7M_039 HL_36684.4 | |
| HL_4WT8_248 | 1/D3/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1U0B_003 HL_28252.7 | |
| HL_4WT8_215 | 1/D4/13:23 | tRNA D-loop HL_93616.2 | ||
| HL_4WT8_216 | 1/D4/32:40 | tRNA anticodon loop HL_06059.5 | ||
| HL_4WT8_217 | 1/D4/54:62 | T-loop with 2 stacked bulged bases HL_28252.7 | ||
| HL_4WT8_239 | 1/DV/7:46 | No text annotation HL_73916.1 | ||
| HL_4WT8_240 | 1/Ds/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_4WT8_219 | 1/Ds/38:44 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_4WT8_220 | 1/Ds/86:91 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4WT8_002 | No text annotation | ||
| HL_4WT8_005 | No text annotation | ||
| HL_4WT8_223 | No text annotation | ||
| HL_4WT8_224 | No text annotation | ||
| HL_4WT8_225 | No text annotation | ||
| HL_4WT8_226 | GNRA with near cWW | ||
| HL_4WT8_227 | tRNA D-loop | ||
| HL_4WT8_228 | No text annotation | ||
| HL_4WT8_230 | No text annotation | ||
| HL_4WT8_079 | Other HL | ||
| HL_4WT8_091 | No text annotation | ||
| HL_4WT8_100 | No text annotation | ||
| HL_4WT8_105 | No text annotation | ||
| HL_4WT8_232 | No text annotation | ||
| HL_4WT8_113 | No text annotation | ||
| HL_4WT8_243 | No text annotation | ||
| HL_4WT8_233 | No text annotation | ||
| HL_4WT8_117 | No text annotation | ||
| HL_4WT8_129 | No text annotation | ||
| HL_4WT8_132 | No text annotation | ||
| HL_4WT8_133 | No text annotation | ||
| HL_4WT8_245 | tRNA anticodon loop | ||
| HL_4WT8_134 | T-loop with 2 stacked bulged bases | ||
| HL_4WT8_234 | No text annotation | ||
| HL_4WT8_136 | No text annotation | ||
| HL_4WT8_159 | Other HL | ||
| HL_4WT8_171 | No text annotation | ||
| HL_4WT8_172 | No text annotation | ||
| HL_4WT8_180 | No text annotation | ||
| HL_4WT8_193 | No text annotation | ||
| HL_4WT8_197 | No text annotation | ||
| HL_4WT8_209 | tRNA D-loop | ||
| HL_4WT8_214 | No text annotation | ||
| HL_4WT8_218 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4WT8_001 | 1/Ab/31:33, 1/Ab/536:537 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4WT8_002 | 1/Ab/45:46, 1/Ab/392:394 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4WT8_003 | 1/Ab/48:53, 1/Ab/355:357 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4WT8_004 | 1/Ab/55:57, 1/Ab/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_4WT8_005 | 1/Ab/64:67, 1/Ab/97:98 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_4WT8_006 | 1/Ab/68:70, 1/Ab/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4WT8_008 | 1/Ab/123:126, 1/Ab/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4WT8_009 | 1/Ab/127:131, 1/Ab/223:226 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4WT8_010 | 1/Ab/143:148, 1/Ab/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4WT8_011 | 1/Ab/181:183, 1/Ab/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4WT8_012 | 1/Ab/238:243, 1/Ab/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4WT8_013 | 1/Ab/245:248, 1/Ab/270:271 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4WT8_014 | 1/Ab/288:289, 1/Ab/300:304 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4WT8_015 | 1/Ab/363:365, 1/Ab/388:389 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_4WT8_016 | 1/Ab/367:371, 1/Ab/385:386 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_4WT8_017 | 1/Ab/371:372, 1/Ab/383:385 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_4WT8_018 | 1/Ab/405:412, 1/Ab/423:429 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WT8_019 | 1/Ab/441:445, 1/Ab/468:473 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_4WT8_020 | 1/Ab/445:450, 1/Ab/462:468 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4WT8_021 | 1/Ab/488:495, 1/Ab/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4WT8_022 | 1/Ab/499:505, 1/Ab/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WT8_023 | 1/Ab/553:559, 1/Ab/858:859 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4WT8_024 | 1/Ab/564:568, 1/Ab/741:745 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_4WT8_025 | 1/Ab/578:580, 1/Ab/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4WT8_026 | 1/Ab/581:582, 1/Ab/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_4WT8_027 | 1/Ab/589:596, 1/Ab/612:617 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4WT8_028 | 1/Ab/638:639, 1/Ab/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4WT8_029 | 1/Ab/641:642, 1/Ab/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4WT8_030 | 1/Ab/646:650, 1/Ab/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4WT8_360 | 1/Ab/657:661, 1/Ab/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4WT8_032 | 1/Ab/667:672, 1/Ab/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WT8_033 | 1/Ab/758:762, 1/Ab/788:789 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4WT8_034 | 1/Ab/763:767, 1/Ab/783:787 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_4WT8_035 | 1/Ab/865:872, 1/Ab/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4WT8_036 | 1/Ab/900:901, 1/Ab/1376:1378 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4WT8_037 | 1/Ab/903:905, 1/Ab/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4WT8_038 | 1/Ab/911:913, 1/Ab/1363:1367 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_4WT8_039 | 1/Ab/931:932, 1/Ab/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_4WT8_040 | 1/Ab/971:975, 1/Ab/1027:1028 | Minor groove platform | homologous IL_4LFB_039 IL_47078.3 | |
| IL_4WT8_379 | 1/Ab/979:986, 1/Ab/1001:1023 | No text annotation | ||
| IL_4WT8_043 | 1/Ab/1031:1033, 1/Ab/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4WT8_044 | 1/Ab/1035:1039, 1/Ab/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4WT8_045 | 1/Ab/1040:1041, 1/Ab/1181:1185 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4WT8_046 | 1/Ab/1043:1044, 1/Ab/1177:1179 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_4WT8_047 | 1/Ab/1044:1046, 1/Ab/1175:1177 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4WT8_048 | 1/Ab/1107:1111, 1/Ab/1126:1132 | No text annotation | homologous IL_4LFB_048 IL_85222.1 | |
| IL_4WT8_049 | 1/Ab/1229:1235, 1/Ab/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4WT8_050 | 1/Ab/1237:1241, 1/Ab/1258:1264 | No text annotation | ||
| IL_4WT8_362 | 1/Ab/1237:1244, 1/Ab/1255:1264 | No text annotation | ||
| IL_4WT8_051 | 1/Ab/1241:1244, 1/Ab/1255:1258 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4WT8_052 | 1/Ab/1285:1290, 1/Ab/1311:1316 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_4WT8_053 | 1/Ab/1382:1384, 1/Ab/1479:1482 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4WT8_054 | 1/Ab/1384:1387, 1/Ab/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WT8_055 | 1/Ab/1388:1390, 1/Ab/1472:1474 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4WT8_056 | 1/Ab/1390:1392, 1/Ab/1469:1472 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4WT8_057 | 1/Ab/1395:1397, 1/Ab/1464:1466 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_4WT8_058 | 1/Ab/1399:1402, 1/Ab/1459:1462 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WT8_059 | 1/Ab/1414:1418, 1/Ab/1444:1447 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4WT8_060 | 1/Ab/1418:1420, 1/Ab/1442:1444 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4WT8_061 | 1/Ab/1423:1428, 1/Ab/1437:1439 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4WT8_062 | 1/Bb/31:33, 1/Bb/536:537 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_4WT8_063 | 1/Bb/45:46, 1/Bb/392:394 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_4WT8_064 | 1/Bb/48:53, 1/Bb/355:357 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_4WT8_065 | 1/Bb/55:57, 1/Bb/352:353 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_4WT8_066 | 1/Bb/64:67, 1/Bb/97:98 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_4WT8_067 | 1/Bb/68:70, 1/Bb/94:96 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_4WT8_069 | 1/Bb/123:126, 1/Bb/227:228 | Multiple bulged bases | homologous IL_4LFB_007 IL_33761.2 | |
| IL_4WT8_070 | 1/Bb/127:131, 1/Bb/223:226 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_4WT8_071 | 1/Bb/143:148, 1/Bb/163:169 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_4WT8_072 | 1/Bb/181:183, 1/Bb/196:198 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_4WT8_073 | 1/Bb/238:243, 1/Bb/273:280 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_4WT8_074 | 1/Bb/245:248, 1/Bb/270:271 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_4WT8_075 | 1/Bb/288:289, 1/Bb/300:304 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_4WT8_076 | 1/Bb/363:365, 1/Bb/388:389 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_4WT8_077 | 1/Bb/367:371, 1/Bb/385:386 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_4WT8_078 | 1/Bb/371:372, 1/Bb/383:385 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_4WT8_079 | 1/Bb/405:412, 1/Bb/423:429 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_4WT8_080 | 1/Bb/441:445, 1/Bb/468:473 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_88269.4 | |
| IL_4WT8_380 | 1/Bb/445:450, 1/Bb/462:468 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_4WT8_082 | 1/Bb/488:495, 1/Bb/524:525 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_4WT8_083 | 1/Bb/499:505, 1/Bb/512:520 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_4WT8_084 | 1/Bb/553:559, 1/Bb/858:859 | No text annotation | homologous IL_4LFB_022 IL_38186.6 | |
| IL_4WT8_085 | 1/Bb/564:568, 1/Bb/741:745 | tSH-tHW-tHS | homologous IL_6CZR_135 NA | |
| IL_4WT8_086 | 1/Bb/578:580, 1/Bb/628:629 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_4WT8_087 | 1/Bb/581:582, 1/Bb/624:627 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_4WT8_088 | 1/Bb/589:596, 1/Bb/612:617 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_4WT8_089 | 1/Bb/638:639, 1/Bb/735:738 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_4WT8_090 | 1/Bb/641:642, 1/Bb/731:733 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_4WT8_091 | 1/Bb/646:650, 1/Bb/724:727 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_4WT8_364 | 1/Bb/657:661, 1/Bb/697:701 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_4WT8_093 | 1/Bb/667:672, 1/Bb/683:691 | Kink-turn | homologous IL_4LFB_031 IL_95727.1 | |
| IL_4WT8_094 | 1/Bb/758:762, 1/Bb/788:789 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_4WT8_095 | 1/Bb/763:767, 1/Bb/783:787 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_4WT8_096 | 1/Bb/865:872, 1/Bb/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_4WT8_097 | 1/Bb/900:901, 1/Bb/1376:1378 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_4WT8_098 | 1/Bb/903:905, 1/Bb/1373:1374 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_4WT8_381 | 1/Bb/911:913, 1/Bb/1363:1367 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_4WT8_382 | 1/Bb/931:932, 1/Bb/1208:1210 | Minor groove platform | homologous IL_4LFB_038 IL_51454.2 | |
| IL_4WT8_101 | 1/Bb/971:975, 1/Bb/1027:1028 | Minor groove platform | geometric IL_4LFB_039 IL_47078.3 | |
| IL_4WT8_383 | 1/Bb/979:986, 1/Bb/1001:1023 | No text annotation | ||
| IL_4WT8_103 | 1/Bb/1031:1033, 1/Bb/1190:1191 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_4WT8_104 | 1/Bb/1035:1039, 1/Bb/1186:1188 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_4WT8_105 | 1/Bb/1040:1041, 1/Bb/1181:1185 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_4WT8_106 | 1/Bb/1043:1044, 1/Bb/1177:1179 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_4WT8_107 | 1/Bb/1044:1046, 1/Bb/1175:1177 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_4WT8_109 | 1/Bb/1107:1111, 1/Bb/1126:1132 | No text annotation | geometric IL_4LFB_048 IL_85222.1 | |
| IL_4WT8_110 | 1/Bb/1229:1235, 1/Bb/1266:1272 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_4WT8_111 | 1/Bb/1237:1241, 1/Bb/1258:1264 | No text annotation | ||
| IL_4WT8_366 | 1/Bb/1237:1244, 1/Bb/1255:1264 | No text annotation | ||
| IL_4WT8_112 | 1/Bb/1241:1244, 1/Bb/1255:1258 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_4WT8_367 | 1/Bb/1285:1290, 1/Bb/1311:1316 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_4WT8_114 | 1/Bb/1382:1384, 1/Bb/1479:1482 | No text annotation | homologous IL_4LFB_056 IL_61438.4 | |
| IL_4WT8_115 | 1/Bb/1384:1387, 1/Bb/1475:1479 | No text annotation | geometric IL_4V88_464 NA | |
| IL_4WT8_116 | 1/Bb/1388:1390, 1/Bb/1472:1474 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_87907.2 | |
| IL_4WT8_117 | 1/Bb/1390:1392, 1/Bb/1469:1472 | Decoding loop related | geometric IL_3C3Z_002 IL_31737.3 | |
| IL_4WT8_118 | 1/Bb/1395:1397, 1/Bb/1464:1466 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_4WT8_119 | 1/Bb/1399:1402, 1/Bb/1459:1462 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_4WT8_120 | 1/Bb/1414:1418, 1/Bb/1444:1447 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_4WT8_121 | 1/Bb/1418:1420, 1/Bb/1442:1444 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_4WT8_122 | 1/Bb/1423:1428, 1/Bb/1437:1439 | No text annotation | homologous IL_4LFB_064 IL_49061.1 | |
| IL_4WT8_123 | 1/C1/23:29, 1/C1/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WT8_124 | 1/C1/35:36, 1/C1/467:469 | Single bulged A | homologous IL_7A0S_002 IL_31462.5 | |
| IL_4WT8_368 | 1/C1/41:42, 1/C1/460:462 | Minor groove platform | homologous IL_7A0S_003 IL_51454.2 | |
| IL_4WT8_126 | 1/C1/79:83, 1/C1/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WT8_127 | 1/C1/171:172, 1/C1/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WT8_128 | 1/C1/176:182, 1/C1/189:196 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_006 NA | |
| IL_4WT8_129 | 1/C1/227:233, 1/C1/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WT8_130 | 1/C1/268:269, 1/C1/272:274 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4WT8_131 | 1/C1/290:291, 1/C1/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WT8_133 | 1/C1/303:307, 1/C1/380:383 | tSH-tHW | geometric IL_7RQB_011 NA | |
| IL_4WT8_134 | 1/C1/311:313, 1/C1/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WT8_135 | 1/C1/316:318, 1/C1/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WT8_136 | 1/C1/506:509, 1/C1/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WT8_137 | 1/C1/586:588, 1/C1/597:599 | No text annotation | homologous IL_7RQB_015 NA | |
| IL_4WT8_138 | 1/C1/628:632, 1/C1/642:646 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4WT8_139 | 1/C1/718:720, 1/C1/852:854 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_87907.2 | |
| IL_4WT8_140 | 1/C1/720:724, 1/C1/845:852 | tHW-tHW cross-strand stack | geometric IL_4WF9_021 IL_54041.2 | |
| IL_4WT8_141 | 1/C1/743:744, 1/C1/809:811 | Single bulged A | homologous IL_7RQB_019 NA | |
| IL_4WT8_142 | 1/C1/748:749, 1/C1/774:776 | Single bulged G | geometric IL_7RQB_020 NA | |
| IL_4WT8_143 | 1/C1/749:753, 1/C1/770:774 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_4WT8_144 | 1/C1/784:787, 1/C1/802:804 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.2 | |
| IL_4WT8_145 | 1/C1/821:823, 1/C1/833:837 | Multiple bulged bases | geometric IL_7RQB_023 NA | |
| IL_4WT8_146 | 1/C1/883:884, 1/C1/984:986 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_4WT8_147 | 1/C1/890:892, 1/C1/975:978 | Intercalated cWW | geometric IL_7RQB_025 NA | |
| IL_4WT8_369 | 1/C1/890:896, 1/C1/972:978 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_4WT8_148 | 1/C1/892:896, 1/C1/972:975 | No text annotation | homologous IL_7RQB_026 NA | |
| IL_4WT8_149 | 1/C1/904:908, 1/C1/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4WT8_150 | 1/C1/908:909, 1/C1/958:960 | Minor groove platform | geometric IL_4V9F_034 IL_51454.2 | |
| IL_4WT8_151 | 1/C1/910:914, 1/C1/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WT8_153 | 1/C1/921:923, 1/C1/944:947 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4WT8_154 | 1/C1/923:925, 1/C1/943:944 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_4WT8_155 | 1/C1/926:927, 1/C1/940:942 | Single bulged A | geometric IL_4WF9_002 IL_31462.5 | |
| IL_4WT8_157 | 1/C1/996:998, 1/C1/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WT8_158 | 1/C1/1039:1041, 1/C1/1204:1205 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4WT8_159 | 1/C1/1043:1047, 1/C1/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WT8_160 | 1/C1/1049:1056, 1/C1/1195:1196 | SSU/LSU pseudoknot | geometric IL_5J7L_278 IL_41203.4 | |
| IL_4WT8_161 | 1/C1/1056:1058, 1/C1/1194:1195 | Single bulged U | homologous IL_7RQB_038 NA | |
| IL_4WT8_162 | 1/C1/1063:1069, 1/C1/1184:1189 | Kink-turn related | geometric IL_4WF9_039 IL_57188.5 | |
| IL_4WT8_163 | 1/C1/1069:1075, 1/C1/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4WT8_164 | 1/C1/1076:1079, 1/C1/1166:1168 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 IL_57744.1 | |
| IL_4WT8_165 | 1/C1/1240:1242, 1/C1/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WT8_166 | 1/C1/1246:1250, 1/C1/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WT8_167 | 1/C1/1252:1259, 1/C1/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WT8_168 | 1/C1/1263:1265, 1/C1/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WT8_169 | 1/C1/1307:1314, 1/C1/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WT8_170 | 1/C1/1355:1358, 1/C1/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WT8_171 | 1/C1/1364:1368, 1/C1/1376:1378 | C-loop | homologous IL_7RQB_051 NA | |
| IL_4WT8_172 | 1/C1/1396:1400, 1/C1/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WT8_173 | 1/C1/1402:1406, 1/C1/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WT8_174 | 1/C1/1460:1461, 1/C1/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WT8_175 | 1/C1/1462:1466, 1/C1/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WT8_176 | 1/C1/1478:1480, 1/C1/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WT8_177 | 1/C1/1482:1485, 1/C1/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WT8_178 | 1/C1/1494:1496, 1/C1/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WT8_179 | 1/C1/1515:1519, 1/C1/1565:1568 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4WT8_180 | 1/C1/1527:1528, 1/C1/1551:1557 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_4WT8_182 | 1/C1/1534:1536, 1/C1/1544:1545 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WT8_183 | 1/C1/1697:1702, 1/C1/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WT8_184 | 1/C1/1709:1711, 1/C1/2016:2018 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4WT8_185 | 1/C1/1712:1715, 1/C1/2014:2015 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 IL_50694.7 | |
| IL_4WT8_370 | 1/C1/1712:1720, 1/C1/2011:2015 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_4WT8_186 | 1/C1/1715:1720, 1/C1/2011:2014 | Intercalated tWH | geometric IL_7RQB_067 NA | |
| IL_4WT8_187 | 1/C1/1732:1737, 1/C1/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4WT8_188 | 1/C1/1800:1801, 1/C1/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WT8_189 | 1/C1/1828:1834, 1/C1/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WT8_190 | 1/C1/1867:1870, 1/C1/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WT8_191 | 1/C1/1871:1872, 1/C1/1919:1922 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4WT8_192 | 1/C1/1876:1879, 1/C1/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WT8_193 | 1/C1/1881:1885, 1/C1/1908:1912 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4WT8_194 | 1/C1/1886:1890, 1/C1/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WT8_195 | 1/C1/1954:1955, 1/C1/1985:1988 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WT8_196 | 1/C1/1955:1966, 1/C1/1982:1985 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4WT8_197 | 1/C1/2071:2073, 1/C1/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WT8_198 | 1/C1/2075:2078, 1/C1/2622:2626 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4WT8_199 | 1/C1/2088:2090, 1/C1/2453:2454 | Single bulged U | homologous IL_7A0S_075 IL_89505.4 | |
| IL_4WT8_200 | 1/C1/2091:2092, 1/C1/2449:2452 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WT8_201 | 1/C1/2102:2104, 1/C1/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WT8_202 | 1/C1/2106:2108, 1/C1/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WT8_204 | 1/C1/2129:2141, 1/C1/2199:2202 | No text annotation | ||
| IL_4WT8_205 | 1/C1/2145:2148, 1/C1/2182:2195 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4WT8_206 | 1/C1/2150:2157, 1/C1/2176:2180 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4WT8_208 | 1/C1/2308:2310, 1/C1/2328:2332 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4WT8_209 | 1/C1/2361:2364, 1/C1/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WT8_210 | 1/C1/2412:2414, 1/C1/2425:2426 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_4WT8_211 | 1/C1/2464:2465, 1/C1/2509:2511 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4WT8_212 | 1/C1/2465:2466, 1/C1/2507:2509 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_4WT8_213 | 1/C1/2468:2470, 1/C1/2504:2505 | Major groove platform | homologous IL_4WF9_091 IL_48076.6 | |
| IL_4WT8_214 | 1/C1/2470:2472, 1/C1/2500:2504 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_4WT8_215 | 1/C1/2477:2481, 1/C1/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4WT8_216 | 1/C1/2518:2519, 1/C1/2591:2593 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_4WT8_217 | 1/C1/2521:2523, 1/C1/2585:2589 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4WT8_218 | 1/C1/2523:2524, 1/C1/2582:2585 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4WT8_219 | 1/C1/2533:2534, 1/C1/2551:2554 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_4WT8_220 | 1/C1/2602:2603, 1/C1/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4WT8_221 | 1/C1/2647:2651, 1/C1/2786:2794 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.3 | |
| IL_4WT8_222 | 1/C1/2663:2669, 1/C1/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_4WF9_100 IL_16458.4 | |
| IL_4WT8_223 | 1/C1/2691:2695, 1/C1/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WT8_225 | 1/C1/2698:2702, 1/C1/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WT8_226 | 1/C1/2706:2707, 1/C1/2722:2726 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4WT8_227 | 1/C1/2749:2754, 1/C1/2774:2779 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4WT8_228 | 1/C1/2847:2848, 1/C1/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WT8_229 | 1/C1/2852:2855, 1/C1/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WT8_230 | 1/C1/2856:2861, 1/C1/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WT8_234 | 1/Cs/17:18, 1/Cs/65:67 | Major groove intercalation | homologous IL_7RQB_111 NA | |
| IL_4WT8_236 | 1/Cs/23:28, 1/Cs/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_4WT8_237 | 1/Cs/30:31, 1/Cs/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_4V9F_103 IL_68140.4 | |
| IL_4WT8_238 | 1/Cs/34:38, 1/Cs/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4WT8_239 | 1/Cs/71:79, 1/Cs/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_4WT8_241 | 1/D1/23:29, 1/D1/534:540 | Triple sheared with non-canonical cWW | homologous IL_7RQB_001 NA | |
| IL_4WT8_242 | 1/D1/35:36, 1/D1/467:469 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_4WT8_243 | 1/D1/41:42, 1/D1/460:462 | Minor groove platform | homologous IL_7RQB_003 NA | |
| IL_4WT8_244 | 1/D1/79:83, 1/D1/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_4WT8_245 | 1/D1/171:172, 1/D1/200:202 | Single stack bend | homologous IL_7RQB_005 NA | |
| IL_4WT8_246 | 1/D1/176:182, 1/D1/189:196 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_4WT8_247 | 1/D1/227:233, 1/D1/241:246 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
| IL_4WT8_248 | 1/D1/268:269, 1/D1/272:274 | Single bulged U | homologous IL_7RQB_008 NA | |
| IL_4WT8_249 | 1/D1/290:291, 1/D1/391:393 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_4WT8_251 | 1/D1/303:307, 1/D1/380:383 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_4WT8_252 | 1/D1/311:313, 1/D1/373:376 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_4WT8_253 | 1/D1/316:318, 1/D1/366:370 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_4WT8_254 | 1/D1/506:509, 1/D1/520:533 | No text annotation | homologous IL_7RQB_014 NA | |
| IL_4WT8_255 | 1/D1/586:588, 1/D1/597:599 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_4WT8_256 | 1/D1/628:632, 1/D1/642:646 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.2 | |
| IL_4WT8_257 | 1/D1/718:720, 1/D1/852:854 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_4WT8_258 | 1/D1/720:724, 1/D1/845:852 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_54041.2 | |
| IL_4WT8_259 | 1/D1/743:744, 1/D1/809:811 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_4WT8_260 | 1/D1/748:749, 1/D1/774:776 | Single bulged G | homologous IL_7RQB_020 NA | |
| IL_4WT8_261 | 1/D1/749:753, 1/D1/770:774 | Triple sheared | geometric IL_7RQB_021 NA | |
| IL_4WT8_262 | 1/D1/784:787, 1/D1/802:804 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_4WT8_263 | 1/D1/821:823, 1/D1/833:837 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_4WT8_264 | 1/D1/883:884, 1/D1/984:986 | Single stack bend | homologous IL_4WF9_028 IL_90729.1 | |
| IL_4WT8_265 | 1/D1/890:892, 1/D1/975:978 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_4WT8_266 | 1/D1/892:896, 1/D1/972:975 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_4WT8_267 | 1/D1/904:908, 1/D1/960:964 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_4WT8_268 | 1/D1/908:909, 1/D1/958:960 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_4WT8_269 | 1/D1/910:914, 1/D1/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_4WT8_270 | 1/D1/916:918, 1/D1/950:952 | Isolated cWS basepair | homologous IL_7RQB_030 NA | |
| IL_4WT8_271 | 1/D1/921:923, 1/D1/944:947 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_4WT8_272 | 1/D1/923:925, 1/D1/943:944 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_4WT8_374 | 1/D1/923:927, 1/D1/940:944 | No text annotation | ||
| IL_4WT8_273 | 1/D1/926:927, 1/D1/940:942 | Single bulged A | geometric IL_4WF9_002 IL_31462.5 | |
| IL_4WT8_275 | 1/D1/996:998, 1/D1/1007:1009 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_4WT8_276 | 1/D1/1039:1041, 1/D1/1204:1205 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_4WT8_277 | 1/D1/1043:1047, 1/D1/1198:1202 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_4WT8_278 | 1/D1/1049:1056, 1/D1/1195:1196 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
| IL_4WT8_279 | 1/D1/1056:1058, 1/D1/1194:1195 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_4WT8_280 | 1/D1/1063:1069, 1/D1/1184:1189 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
| IL_4WT8_281 | 1/D1/1069:1075, 1/D1/1169:1184 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_4WT8_282 | 1/D1/1076:1079, 1/D1/1166:1168 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_4WT8_283 | 1/D1/1240:1242, 1/D1/1292:1295 | Isolated cWS basepair | homologous IL_7RQB_045 NA | |
| IL_4WT8_284 | 1/D1/1246:1250, 1/D1/1285:1288 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_4WT8_285 | 1/D1/1252:1259, 1/D1/1279:1283 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_4WT8_286 | 1/D1/1263:1265, 1/D1/1274:1275 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_4WT8_287 | 1/D1/1307:1314, 1/D1/2032:2038 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_4WT8_288 | 1/D1/1355:1358, 1/D1/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_4WT8_375 | 1/D1/1364:1368, 1/D1/1376:1378 | C-loop | homologous IL_9DFE_050 IL_63596.11 | |
| IL_4WT8_290 | 1/D1/1396:1400, 1/D1/1421:1425 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_4WT8_291 | 1/D1/1402:1406, 1/D1/1415:1419 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_4WT8_292 | 1/D1/1460:1461, 1/D1/1628:1632 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_4WT8_293 | 1/D1/1462:1466, 1/D1/1623:1627 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_4WT8_294 | 1/D1/1478:1480, 1/D1/1603:1606 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_4WT8_295 | 1/D1/1482:1485, 1/D1/1597:1601 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_4WT8_296 | 1/D1/1494:1496, 1/D1/1508:1509 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_4WT8_297 | 1/D1/1515:1519, 1/D1/1565:1568 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_4WT8_298 | 1/D1/1527:1528, 1/D1/1551:1557 | No text annotation | geometric IL_7RQB_061 NA | |
| IL_4WT8_300 | 1/D1/1534:1536, 1/D1/1544:1545 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_4WT8_301 | 1/D1/1697:1702, 1/D1/2025:2027 | No text annotation | homologous IL_7RQB_064 NA | |
| IL_4WT8_302 | 1/D1/1709:1711, 1/D1/2016:2018 | Isolated tWW turn | homologous IL_7A0S_060 IL_67095.2 | |
| IL_4WT8_303 | 1/D1/1712:1715, 1/D1/2014:2015 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_4WT8_376 | 1/D1/1712:1720, 1/D1/2011:2015 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_4WT8_304 | 1/D1/1715:1720, 1/D1/2011:2014 | Intercalated tWH | homologous IL_7RQB_067 NA | |
| IL_4WT8_305 | 1/D1/1732:1737, 1/D1/1742:1748 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_4WT8_306 | 1/D1/1800:1801, 1/D1/2001:2003 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_4WT8_307 | 1/D1/1828:1834, 1/D1/1843:1851 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_4WT8_308 | 1/D1/1867:1870, 1/D1/1923:1924 | Minor groove platform, major groove intercalation | homologous IL_7RQB_071 NA | |
| IL_4WT8_309 | 1/D1/1871:1872, 1/D1/1919:1922 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_4WT8_310 | 1/D1/1876:1879, 1/D1/1914:1915 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_4WT8_311 | 1/D1/1881:1885, 1/D1/1908:1912 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_4WT8_312 | 1/D1/1886:1890, 1/D1/1903:1907 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_4WT8_313 | 1/D1/1954:1955, 1/D1/1985:1988 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_4WT8_314 | 1/D1/1955:1966, 1/D1/1982:1985 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_4WT8_315 | 1/D1/2071:2073, 1/D1/2628:2629 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_4WT8_316 | 1/D1/2075:2078, 1/D1/2622:2626 | No text annotation | homologous IL_9DFE_079 IL_70335.1 | |
| IL_4WT8_317 | 1/D1/2088:2090, 1/D1/2453:2454 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_4WT8_318 | 1/D1/2091:2092, 1/D1/2449:2452 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_4WT8_319 | 1/D1/2102:2104, 1/D1/2247:2250 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_4WT8_320 | 1/D1/2106:2108, 1/D1/2243:2245 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_4WT8_322 | 1/D1/2129:2141, 1/D1/2199:2202 | No text annotation | ||
| IL_4WT8_323 | 1/D1/2145:2148, 1/D1/2182:2195 | No text annotation | homologous IL_3U4M_003 IL_75283.2 | |
| IL_4WT8_324 | 1/D1/2150:2157, 1/D1/2176:2180 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_4WT8_384 | 1/D1/2150:2158, 1/D1/2175:2180 | Kink-turn | geometric IL_4LFB_031 IL_95727.1 | |
| IL_4WT8_326 | 1/D1/2308:2310, 1/D1/2328:2332 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_4WT8_327 | 1/D1/2361:2364, 1/D1/2375:2378 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_4WT8_328 | 1/D1/2412:2414, 1/D1/2425:2426 | Single bulged U | homologous IL_4WF9_088 IL_89505.4 | |
| IL_4WT8_329 | 1/D1/2464:2465, 1/D1/2509:2511 | Single stack bend | homologous IL_7RQB_091 NA | |
| IL_4WT8_330 | 1/D1/2465:2466, 1/D1/2507:2509 | Major groove platform | geometric IL_7RQB_092 NA | |
| IL_4WT8_331 | 1/D1/2468:2470, 1/D1/2504:2505 | Major groove platform | geometric IL_4WF9_091 IL_48076.6 | |
| IL_4WT8_332 | 1/D1/2470:2472, 1/D1/2500:2504 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_4WT8_333 | 1/D1/2477:2481, 1/D1/2491:2495 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_4WT8_334 | 1/D1/2518:2519, 1/D1/2591:2593 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_4WT8_335 | 1/D1/2521:2523, 1/D1/2585:2589 | Isolated non-canonical cWW with bulges | geometric IL_7RQB_097 NA | |
| IL_4WT8_336 | 1/D1/2523:2524, 1/D1/2582:2585 | Multiple bulged bases | homologous IL_7RQB_098 NA | |
| IL_4WT8_337 | 1/D1/2533:2534, 1/D1/2551:2554 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_4WT8_338 | 1/D1/2602:2603, 1/D1/2612:2614 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_4WT8_339 | 1/D1/2647:2651, 1/D1/2786:2794 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_4WT8_340 | 1/D1/2663:2669, 1/D1/2674:2679 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7A0S_094 IL_16458.4 | |
| IL_4WT8_341 | 1/D1/2691:2695, 1/D1/2737:2739 | C-loop | homologous IL_7RQB_104 NA | |
| IL_4WT8_342 | 1/D1/2698:2702, 1/D1/2730:2734 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_4WT8_343 | 1/D1/2706:2707, 1/D1/2722:2726 | Multiple bulged bases | homologous IL_7A0S_097 IL_42626.2 | |
| IL_4WT8_344 | 1/D1/2749:2754, 1/D1/2774:2779 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
| IL_4WT8_345 | 1/D1/2847:2848, 1/D1/2887:2889 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_4WT8_346 | 1/D1/2852:2855, 1/D1/2879:2883 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_4WT8_347 | 1/D1/2856:2861, 1/D1/2874:2878 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_4WT8_350 | 1/DV/7:10, 1/DV/25:46 | No text annotation IL_80298.1 | ||
| IL_4WT8_351 | 1/Ds/17:18, 1/Ds/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.5 | |
| IL_4WT8_353 | 1/Ds/23:28, 1/Ds/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_4WT8_354 | 1/Ds/30:31, 1/Ds/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_4WT8_355 | 1/Ds/34:38, 1/Ds/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_4WT8_356 | 1/Ds/71:79, 1/Ds/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4WT8_358 | No text annotation | ||
| IL_4WT8_007 | Isolated non-canonical cWW pair | ||
| IL_4WT8_359 | tWH-tWH-tHW-tHW | ||
| IL_4WT8_031 | No text annotation | ||
| IL_4WT8_041 | No text annotation | ||
| IL_4WT8_042 | No text annotation | ||
| IL_4WT8_361 | Isolated non-canonical cWW pair | ||
| IL_4WT8_068 | Isolated cWH basepair | ||
| IL_4WT8_363 | tWH-tWH-tHW-tHW | ||
| IL_4WT8_081 | No text annotation | ||
| IL_4WT8_092 | No text annotation | ||
| IL_4WT8_099 | No text annotation | ||
| IL_4WT8_100 | Minor groove platform with extra cWW | ||
| IL_4WT8_365 | No text annotation | ||
| IL_4WT8_102 | No text annotation | ||
| IL_4WT8_108 | Isolated non-canonical cWW pair | ||
| IL_4WT8_113 | No text annotation | ||
| IL_4WT8_125 | Major groove platform with extra cWW | ||
| IL_4WT8_132 | No text annotation | ||
| IL_4WT8_152 | Isolated cWS basepair | ||
| IL_4WT8_156 | Isolated cWH basepair | ||
| IL_4WT8_181 | No text annotation | ||
| IL_4WT8_203 | No text annotation | ||
| IL_4WT8_371 | No text annotation | ||
| IL_4WT8_372 | Kink-turn | ||
| IL_4WT8_207 | No text annotation | ||
| IL_4WT8_373 | Isolated non-canonical cWW pair | ||
| IL_4WT8_224 | Isolated non-canonical cWW pair | ||
| IL_4WT8_231 | No text annotation | ||
| IL_4WT8_232 | Isolated non-canonical cWW pair | ||
| IL_4WT8_233 | No text annotation | ||
| IL_4WT8_235 | Isolated cWH basepair | ||
| IL_4WT8_240 | Isolated non-canonical cWW pair | ||
| IL_4WT8_250 | No text annotation | ||
| IL_4WT8_274 | Isolated non-canonical cWW pair | ||
| IL_4WT8_289 | C-loop with extra cWW pair | ||
| IL_4WT8_299 | No text annotation | ||
| IL_4WT8_321 | Isolated cWH basepair | ||
| IL_4WT8_377 | No text annotation | ||
| IL_4WT8_378 | No text annotation | ||
| IL_4WT8_325 | Isolated non-canonical cWW pair | ||
| IL_4WT8_348 | Not an internal loop | ||
| IL_4WT8_349 | No text annotation | ||
| IL_4WT8_352 | Isolated cWH basepair | ||
| IL_4WT8_357 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4WT8_030 | 1/Ab/47:48, 1/Ab/357:363, 1/Ab/389:391 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4WT8_031 | 1/Ab/47:53, 1/Ab/355:363, 1/Ab/389:391 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4WT8_032 | 1/Ab/570:572, 1/Ab/635:638, 1/Ab/738:739 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4WT8_033 | 1/Ab/570:572, 1/Ab/635:639, 1/Ab/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4WT8_034 | 1/Ab/656:657, 1/Ab/701:709, 1/Ab/716:718 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_4WT8_001 | 1/Ab/810:813, 1/Ab/835:839, 1/Ab/846:852 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4WT8_035 | 1/Ab/914:917, 1/Ab/1326:1332, 1/Ab/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WT8_002 | 1/Ab/921:924, 1/Ab/1217:1219, 1/Ab/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4WT8_003 | 1/Ab/933:940, 1/Ab/951:962, 1/Ab/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4WT8_004 | 1/Ab/968:971, 1/Ab/1028:1030, 1/Ab/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4WT8_036 | 1/Ab/968:975, 1/Ab/1027:1030, 1/Ab/1192:1197 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4WT8_005 | 1/Ab/1046:1051, 1/Ab/1090:1096, 1/Ab/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4WT8_037 | 1/Ab/1056:1057, 1/Ab/1066:1070, 1/Ab/1081:1085 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4WT8_006 | 1/Ab/1099:1101, 1/Ab/1138:1144, 1/Ab/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4WT8_007 | 1/Ab/1219:1223, 1/Ab/1278:1285, 1/Ab/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4WT8_038 | 1/Bb/47:48, 1/Bb/357:363, 1/Bb/389:391 | No text annotation | geometric J3_4LFB_010 J3_67856.4 | |
| J3_4WT8_039 | 1/Bb/47:53, 1/Bb/355:363, 1/Bb/389:391 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_4WT8_040 | 1/Bb/570:572, 1/Bb/635:638, 1/Bb/738:739 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_4WT8_041 | 1/Bb/570:572, 1/Bb/635:639, 1/Bb/735:739 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_4WT8_042 | 1/Bb/656:657, 1/Bb/701:709, 1/Bb/716:718 | No text annotation | homologous J3_6CZR_017 NA | |
| J3_4WT8_008 | 1/Bb/810:813, 1/Bb/835:839, 1/Bb/846:852 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_4WT8_043 | 1/Bb/914:917, 1/Bb/1326:1332, 1/Bb/1355:1362 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_4WT8_009 | 1/Bb/921:924, 1/Bb/1217:1219, 1/Bb/1319:1322 | No text annotation | homologous J3_4LFB_003 J3_52655.4 | |
| J3_4WT8_010 | 1/Bb/933:940, 1/Bb/951:962, 1/Bb/1203:1207 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_4WT8_011 | 1/Bb/968:971, 1/Bb/1028:1030, 1/Bb/1192:1197 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_4WT8_045 | 1/Bb/968:975, 1/Bb/1027:1030, 1/Bb/1192:1197 | No text annotation | homologous J3_4LFB_016 J3_76475.2 | |
| J3_4WT8_012 | 1/Bb/1046:1051, 1/Bb/1090:1096, 1/Bb/1169:1175 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_4WT8_046 | 1/Bb/1056:1057, 1/Bb/1066:1070, 1/Bb/1081:1085 | No text annotation | homologous J3_6CZR_024 NA | |
| J3_4WT8_013 | 1/Bb/1099:1101, 1/Bb/1138:1144, 1/Bb/1157:1166 | No text annotation | homologous J3_4LFB_018 J3_17791.2 | |
| J3_4WT8_014 | 1/Bb/1219:1223, 1/Bb/1278:1285, 1/Bb/1316:1319 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_4WT8_047 | 1/C1/29:30, 1/C1/499:506, 1/C1/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WT8_048 | 1/C1/29:30, 1/C1/499:509, 1/C1/520:534 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4WT8_049 | 1/C1/31:34, 1/C1/470:486, 1/C1/493:498 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4WT8_050 | 1/C1/54:55, 1/C1/68:74, 1/C1/107:111 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4WT8_051 | 1/C1/320:324, 1/C1/339:348, 1/C1/360:364 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4WT8_015 | 1/C1/729:735, 1/C1/819:821, 1/C1/837:840 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4WT8_016 | 1/C1/744:746, 1/C1/778:782, 1/C1/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WT8_017 | 1/C1/1343:1348, 1/C1/1670:1672, 1/C1/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WT8_018 | 1/C1/1351:1354, 1/C1/1650:1656, 1/C1/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WT8_052 | 1/C1/1389:1395, 1/C1/1426:1430, 1/C1/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4WT8_053 | 1/C1/1469:1474, 1/C1/1610:1611, 1/C1/1614:1620 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_4WT8_019 | 1/C1/2112:2114, 1/C1/2217:2221, 1/C1/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WT8_054 | 1/C1/2293:2295, 1/C1/2395:2406, 1/C1/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4WT8_020 | 1/C1/2306:2308, 1/C1/2332:2334, 1/C1/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WT8_021 | 1/C1/2528:2531, 1/C1/2556:2558, 1/C1/2572:2578 | No text annotation | homologous J3_7A0S_011 J3_32601.5 | |
| J3_4WT8_055 | 1/C1/2823:2824, 1/C1/2840:2845, 1/C1/2891:2895 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WT8_057 | 1/Cs/11:16, 1/Cs/68:69, 1/Cs/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J3_4WT8_058 | 1/D1/29:30, 1/D1/499:506, 1/D1/533:534 | No text annotation | geometric J3_8VTW_036 NA | |
| J3_4WT8_059 | 1/D1/29:30, 1/D1/499:509, 1/D1/520:534 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
| J3_4WT8_060 | 1/D1/31:34, 1/D1/470:486, 1/D1/493:498 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_4WT8_061 | 1/D1/54:55, 1/D1/68:74, 1/D1/107:111 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_4WT8_062 | 1/D1/320:324, 1/D1/339:348, 1/D1/360:364 | No text annotation | homologous J3_9DFE_006 J3_46299.2 | |
| J3_4WT8_022 | 1/D1/729:735, 1/D1/819:821, 1/D1/837:840 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_4WT8_023 | 1/D1/744:746, 1/D1/778:782, 1/D1/806:809 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_4WT8_024 | 1/D1/1343:1348, 1/D1/1670:1672, 1/D1/1685:1688 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_4WT8_025 | 1/D1/1351:1354, 1/D1/1650:1656, 1/D1/1665:1667 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_4WT8_063 | 1/D1/1389:1395, 1/D1/1426:1430, 1/D1/1447:1448 | No text annotation | homologous J3_9DFE_012 J3_31965.2 | |
| J3_4WT8_064 | 1/D1/1469:1474, 1/D1/1610:1611, 1/D1/1614:1620 | No text annotation | homologous J3_7A0S_019 J3_34864.2 | |
| J3_4WT8_026 | 1/D1/2112:2114, 1/D1/2217:2221, 1/D1/2234:2239 | No text annotation | homologous J3_7RQB_010 NA | |
| J3_4WT8_065 | 1/D1/2293:2295, 1/D1/2395:2406, 1/D1/2432:2438 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_4WT8_027 | 1/D1/2306:2308, 1/D1/2332:2334, 1/D1/2343:2348 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_4WT8_028 | 1/D1/2528:2531, 1/D1/2556:2558, 1/D1/2572:2578 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_4WT8_066 | 1/D1/2823:2824, 1/D1/2840:2845, 1/D1/2891:2895 | No text annotation | homologous J3_9DFE_019 J3_76911.2 | |
| J3_4WT8_067 | 1/Ds/11:16, 1/Ds/68:69, 1/Ds/108:110 | No text annotation | homologous J3_9DFE_020 J3_12003.2 | |
| J4_4WT8_001 | 1/Ab/109:116, 1/Ab/235:236, 1/Ab/282:285, 1/Ab/307:308 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4WT8_002 | 1/Ab/137:139, 1/Ab/173:178, 1/Ab/201:205, 1/Ab/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4WT8_003 | 1/Ab/559:561, 1/Ab/748:753, 1/Ab/794:805, 1/Ab/857:858 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4WT8_004 | 1/Bb/109:116, 1/Bb/235:236, 1/Bb/282:285, 1/Bb/307:308 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_4WT8_005 | 1/Bb/137:139, 1/Bb/173:178, 1/Bb/201:205, 1/Bb/215:217 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_4WT8_006 | 1/Bb/559:561, 1/Bb/748:753, 1/Bb/794:805, 1/Bb/857:858 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_4WT8_007 | 1/C1/256:257, 1/C1/396:401, 1/C1/425:432, 1/C1/447:450 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4WT8_008 | 1/C1/320:324, 1/C1/339:342, 1/C1/346:348, 1/C1/360:364 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_4WT8_009 | 1/C1/1315:1321, 1/C1/1339:1340, 1/C1/1691:1694, 1/C1/2030:2031 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_4WT8_010 | 1/C1/1355:1359, 1/C1/1383:1388, 1/C1/1449:1450, 1/C1/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_4WT8_011 | 1/C1/1358:1359, 1/C1/1383:1388, 1/C1/1449:1450, 1/C1/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_4WT8_012 | 1/C1/1489:1491, 1/C1/1512:1513, 1/C1/1570:1571, 1/C1/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4WT8_013 | 1/C1/1802:1806, 1/C1/1818:1822, 1/C1/1857:1860, 1/C1/1996:2000 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WT8_014 | 1/C1/1863:1865, 1/C1/1926:1927, 1/C1/1945:1954, 1/C1/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4WT8_015 | 1/C1/2296:2300, 1/C1/2354:2358, 1/C1/2381:2383, 1/C1/2392:2394 | No text annotation | homologous J4_4WF9_008 J4_04930.6 | |
| J4_4WT8_016 | 1/C1/2654:2657, 1/C1/2685:2687, 1/C1/2743:2747, 1/C1/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4WT8_031 | 1/C3/7:10, 1/C3/25:27, 1/C3/43:49, 1/C3/65:66 | tRNA junction | homologous J4_3WQY_001 J4_70449.27 | |
| J4_4WT8_032 | 1/C4/7:10, 1/C4/26:28, 1/C4/44:50, 1/C4/66:67 | tRNA junction | homologous J4_4TUE_004 J4_70449.27 | |
| J4_4WT8_019 | 1/D1/256:257, 1/D1/396:401, 1/D1/425:432, 1/D1/447:450 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_4WT8_020 | 1/D1/320:324, 1/D1/339:342, 1/D1/346:348, 1/D1/360:364 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
| J4_4WT8_021 | 1/D1/1315:1321, 1/D1/1339:1340, 1/D1/1691:1694, 1/D1/2030:2031 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
| J4_4WT8_022 | 1/D1/1355:1359, 1/D1/1383:1388, 1/D1/1449:1450, 1/D1/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_69051.6 | |
| J4_4WT8_023 | 1/D1/1358:1359, 1/D1/1383:1388, 1/D1/1449:1450, 1/D1/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_10313.5 | |
| J4_4WT8_024 | 1/D1/1489:1491, 1/D1/1512:1513, 1/D1/1570:1571, 1/D1/1592:1593 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_4WT8_025 | 1/D1/1802:1806, 1/D1/1818:1822, 1/D1/1857:1860, 1/D1/1996:2000 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_4WT8_026 | 1/D1/1863:1865, 1/D1/1926:1927, 1/D1/1945:1954, 1/D1/1988:1993 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_4WT8_027 | 1/D1/2296:2300, 1/D1/2354:2358, 1/D1/2381:2383, 1/D1/2392:2394 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_4WT8_028 | 1/D1/2654:2657, 1/D1/2685:2687, 1/D1/2743:2747, 1/D1/2781:2783 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_4WT8_033 | 1/D3/7:10, 1/D3/25:27, 1/D3/43:51, 1/D3/63:66 | No text annotation | homologous J4_7U2I_014 J4_47701.1 | |
| J4_4WT8_034 | 1/D4/7:10, 1/D4/26:28, 1/D4/44:50, 1/D4/66:67 | tRNA junction J4_70449.27 | ||
| J5_4WT8_001 | 1/Ab/37:40, 1/Ab/399:402, 1/Ab/432:437, 1/Ab/477:484, 1/Ab/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WT8_002 | 1/Ab/59:62, 1/Ab/100:107, 1/Ab/310:312, 1/Ab/333:335, 1/Ab/346:350 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4WT8_003 | 1/Bb/37:40, 1/Bb/399:402, 1/Bb/432:437, 1/Bb/477:484, 1/Bb/529:532 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_4WT8_004 | 1/Bb/59:62, 1/Bb/100:107, 1/Bb/310:312, 1/Bb/333:335, 1/Bb/346:350 | No text annotation | homologous J5_4LFB_002 J5_59910.6 | |
| J5_4WT8_005 | 1/C1/45:52, 1/C1/113:118, 1/C1/127:128, 1/C1/147:149, 1/C1/164:166 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4WT8_006 | 1/C1/555:557, 1/C1/582:586, 1/C1/599:601, 1/C1/1306:1307, 1/C1/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4WT8_007 | 1/C1/606:611, 1/C1/714:717, 1/C1/855:858, 1/C1/1239:1240, 1/C1/1295:1301 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4WT8_008 | 1/C1/1720:1728, 1/C1/1752:1753, 1/C1/1781:1782, 1/C1/1786:1794, 1/C1/2009:2011 | No text annotation | homologous J5_7A0S_005 J5_62523.6 | |
| J5_4WT8_009 | 1/C1/2078:2085, 1/C1/2457:2464, 1/C1/2511:2518, 1/C1/2593:2599, 1/C1/2617:2622 | No text annotation | ||
| J5_4WT8_010 | 1/C1/2095:2098, 1/C1/2254:2257, 1/C1/2269:2270, 1/C1/2292:2293, 1/C1/2438:2446 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J5_4WT8_011 | 1/D1/45:52, 1/D1/113:118, 1/D1/127:128, 1/D1/147:149, 1/D1/164:166 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_4WT8_012 | 1/D1/555:557, 1/D1/582:586, 1/D1/599:601, 1/D1/1306:1307, 1/D1/2038:2039 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_4WT8_013 | 1/D1/606:611, 1/D1/714:717, 1/D1/855:858, 1/D1/1239:1240, 1/D1/1295:1301 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_4WT8_014 | 1/D1/1720:1728, 1/D1/1752:1753, 1/D1/1781:1782, 1/D1/1786:1794, 1/D1/2009:2011 | No text annotation | homologous J5_7A0S_005 J5_62523.6 | |
| J5_4WT8_015 | 1/D1/2078:2085, 1/D1/2457:2464, 1/D1/2511:2518, 1/D1/2593:2599, 1/D1/2617:2622 | No text annotation | ||
| J5_4WT8_016 | 1/D1/2095:2098, 1/D1/2254:2257, 1/D1/2269:2270, 1/D1/2292:2293, 1/D1/2438:2446 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J6_4WT8_001 | 1/C1/43:44, 1/C1/167:171, 1/C1/202:212, 1/C1/219:223, 1/C1/250:254, 1/C1/452:459 | No text annotation | ||
| J6_4WT8_002 | 1/C1/2095:2098, 1/C1/2254:2257, 1/C1/2269:2270, 1/C1/2292:2295, 1/C1/2395:2406, 1/C1/2432:2446 | No text annotation | ||
| J6_4WT8_003 | 1/D1/43:44, 1/D1/167:171, 1/D1/202:212, 1/D1/219:223, 1/D1/250:254, 1/D1/452:459 | No text annotation | ||
| J6_4WT8_004 | 1/D1/2095:2098, 1/D1/2254:2257, 1/D1/2269:2270, 1/D1/2292:2295, 1/D1/2395:2406, 1/D1/2432:2446 | No text annotation | ||
| J7_4WT8_001 | 1/C1/863:868, 1/C1/881:882, 1/C1/987:990, 1/C1/1015:1021, 1/C1/1032:1036, 1/C1/1208:1209, 1/C1/1229:1234 | No text annotation | ||
| J7_4WT8_002 | 1/D1/863:868, 1/D1/881:882, 1/D1/987:990, 1/D1/1015:1021, 1/D1/1032:1036, 1/D1/1208:1209, 1/D1/1229:1234 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4WT8_044 | No text annotation | ||
| J3_4WT8_056 | No text annotation | ||
| J3_4WT8_068 | No text annotation | ||
| J3_4WT8_029 | No text annotation | ||
| J4_4WT8_017 | No text annotation | ||
| J4_4WT8_018 | No text annotation | ||
| J4_4WT8_029 | No text annotation | ||
| J4_4WT8_030 | No text annotation |
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