HL_4WT8_059

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGCAACCCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_059 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1255

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WT8|1|Bb|C|1296
4WT8|1|Bb|U|1297
4WT8|1|Bb|G|1298
4WT8|1|Bb|C|1299
4WT8|1|Bb|A|1300
4WT8|1|Bb|A|1301
4WT8|1|Bb|C|1302
4WT8|1|Bb|C|1303
4WT8|1|Bb|C|1304
4WT8|1|Bb|G|1305

Current chains

Chain Bb

RNA (1504-MER)

Nearby chains

Chain BM

30S ribosomal protein S13

Chain BN

30S ribosomal protein S14 type Z

Chain BT

30S ribosomal protein S19