HL_4WT8_079

3D structure

PDB id

4WT8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4WT8|1|C1|A|571

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WT8_079 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3946

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4WT8|1|C1|C|566
4WT8|1|C1|C|567
4WT8|1|C1|A|570
4WT8|1|C1|A|571
4WT8|1|C1|G|572
4WT8|1|C1|G|573

Current chains

Chain C1

23S rRNA (2899-MER)

Nearby chains

Chain CM

50S ribosomal protein L13

Chain CU

50S ribosomal protein L21